RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 Q9H521 79 aa19.45■□□□□ 0.7
VPS28-213ENST00000530983 CLIC5Q9NZA1 410 aa19.45■□□□□ 0.7
VPS28-213ENST00000530983 CAPNS1P04632 268 aa19.44■□□□□ 0.7
VPS28-213ENST00000530983 TCN1P20061 433 aaPredicted RBP19.44■□□□□ 0.7
VPS28-213ENST00000530983 CHRNA4P43681 627 aa19.44■□□□□ 0.7
VPS28-213ENST00000530983 CD151P48509 253 aa19.44■□□□□ 0.7
VPS28-213ENST00000530983 SULT2A1Q06520 285 aa19.44■□□□□ 0.7
VPS28-213ENST00000530983 EIF4EBP2Q13542 120 aaPredicted RBP19.44■□□□□ 0.7
VPS28-213ENST00000530983 ISLR2Q6UXK2 745 aa19.44■□□□□ 0.7
VPS28-213ENST00000530983 GK5Q6ZS86 529 aa19.44■□□□□ 0.7
VPS28-213ENST00000530983 CATSPER1Q8NEC5 780 aa19.44■□□□□ 0.7
VPS28-213ENST00000530983 CEP70Q8NHQ1 597 aa19.44■□□□□ 0.7
VPS28-213ENST00000530983 PTCD2Q8WV60 388 aaKnown RBP19.44■□□□□ 0.7
VPS28-213ENST00000530983 SLC39A8Q9C0K1 460 aa19.44■□□□□ 0.7
VPS28-213ENST00000530983 TRPV6Q9H1D0 765 aa19.44■□□□□ 0.7
VPS28-213ENST00000530983 IGSF5Q9NSI5 407 aa19.44■□□□□ 0.7
VPS28-213ENST00000530983 NDFIP2Q9NV92 336 aa19.44■□□□□ 0.7
VPS28-213ENST00000530983 ARHGEF38Q9NXL2 777 aa19.44■□□□□ 0.7
VPS28-213ENST00000530983 MRPL42Q9Y6G3 142 aaKnown RBP19.44■□□□□ 0.7
VPS28-213ENST00000530983 A0A087X1B8 175 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 MATN3O15232 486 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 PMPCBO75439 489 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 PENKP01210 267 aaPredicted RBP19.43■□□□□ 0.7
VPS28-213ENST00000530983 HLA-DQB2P05538 268 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 THP07101 528 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 ARSAP15289 507 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 ATP5F1P24539 256 aaPredicted RBP19.43■□□□□ 0.7
VPS28-213ENST00000530983 DNAJB13P59910 316 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 PTK2BQ14289 1009 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 GK3PQ14409 553 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 ARTNQ5T4W7 220 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 SPATA24Q86W54 205 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 HMGCLL1Q8TB92 370 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 LPPQ93052 612 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 PRICKLE1Q96MT3 831 aaPredicted RBP19.43■□□□□ 0.7
VPS28-213ENST00000530983 ATXN3LQ9H3M9 355 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 MRM3Q9HC36 420 aaKnown RBP19.43■□□□□ 0.7
VPS28-213ENST00000530983 GTSE1Q9NYZ3 720 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 CAMSAP3Q9P1Y5 1249 aaPredicted RBP19.43■□□□□ 0.7
VPS28-213ENST00000530983 FBXO5Q9UKT4 447 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 C17orf102A2RUQ5 167 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 KCNU1A8MYU2 1149 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 TFAP2AP05549 437 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 MYL3P08590 195 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 KCNA5P22460 613 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 BDNFP23560 247 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 GEMP55040 296 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 BEX3Q00994 111 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 RBM20Q5T481 1227 aaKnown RBP19.43■□□□□ 0.7
VPS28-213ENST00000530983 CHSY3Q70JA7 882 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 KDELC2Q7Z4H8 507 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 TMEM102Q8N9M5 508 aaPredicted RBP19.43■□□□□ 0.7
VPS28-213ENST00000530983 TNFRSF12AQ9NP84 129 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 CHST12Q9NRB3 414 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 PCDHGA7Q9Y5G6 932 aa19.43■□□□□ 0.7
VPS28-213ENST00000530983 CPB1P15086 417 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 PCSK1P29120 753 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 HOXC13P31276 330 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 CYP2C18P33260 490 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 POU4F1Q01851 419 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 TIGD5Q53EQ6 642 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 KIAA0930Q6ICG6 404 aaPredicted RBP19.42■□□□□ 0.7
VPS28-213ENST00000530983 RANBP10Q6VN20 620 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 SPPL2BQ8TCT7 592 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 MRGPRX2Q96LB1 330 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 CNBD2Q96M20 576 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 FSD1LQ9BXM9 530 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 ENTPD7Q9NQZ7 604 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 FAM105AQ9NUU6 356 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 TMCO1Q9UM00 188 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 FIS1Q9Y3D6 152 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 CASTOR2A6NHX0 329 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 TRIM38O00635 465 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 RNASEH2AO75792 299 aaKnown RBP19.42■□□□□ 0.7
VPS28-213ENST00000530983 INHBCP55103 352 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 CDKL1Q00532 357 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 MYBPC1Q00872 1141 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 CSHL1Q14406 222 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 ZNF789Q5FWF6 425 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 TECRLQ5HYJ1 363 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 SCAMP5Q8TAC9 235 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 ASB9Q96DX5 294 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 PREBQ9HCU5 417 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 UTP6Q9NYH9 597 aaKnown RBP19.42■□□□□ 0.7
VPS28-213ENST00000530983 NDUFA13Q9P0J0 144 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 LZTS1Q9Y250 596 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 MIA3Q5JRA6 1907 aa19.42■□□□□ 0.7
VPS28-213ENST00000530983 IRAK2O43187 625 aa19.41■□□□□ 0.7
VPS28-213ENST00000530983 PAGE1O75459 146 aa19.41■□□□□ 0.7
VPS28-213ENST00000530983 PAMP19021 973 aa19.41■□□□□ 0.7
VPS28-213ENST00000530983 RPL5P46777 297 aaKnown RBP19.41■□□□□ 0.7
VPS28-213ENST00000530983 C1QTNF8P60827 252 aa19.41■□□□□ 0.7
VPS28-213ENST00000530983 SEPT6Q14141 434 aa19.41■□□□□ 0.7
VPS28-213ENST00000530983 C6orf52Q5T4I8 152 aa19.41■□□□□ 0.7
VPS28-213ENST00000530983 MANEALQ5VSG8 457 aa19.41■□□□□ 0.7
VPS28-213ENST00000530983 BTBD8Q5XKL5 378 aa19.41■□□□□ 0.7
VPS28-213ENST00000530983 RPS27LQ71UM5 84 aaKnown RBP19.41■□□□□ 0.7
VPS28-213ENST00000530983 ANKRD23Q86SG2 305 aa19.41■□□□□ 0.7
VPS28-213ENST00000530983 PCDH20Q8N6Y1 951 aaKnown RBP19.41■□□□□ 0.7
VPS28-213ENST00000530983 NMD3Q96D46 503 aaKnown RBP19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms