RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 IQCHQ86VS3 1027 aa10.79□□□□□ -0.68
CD44-227ENST00000528086 CAMK1DQ8IU85 385 aa10.79□□□□□ -0.68
CD44-227ENST00000528086 PQLC3Q8N755 202 aa10.79□□□□□ -0.68
CD44-227ENST00000528086 TC2NQ8N9U0 490 aa10.79□□□□□ -0.68
CD44-227ENST00000528086 PCDH19Q8TAB3 1148 aa10.79□□□□□ -0.68
CD44-227ENST00000528086 ZNF564Q8TBZ8 553 aaPredicted RBP10.79□□□□□ -0.68
CD44-227ENST00000528086 LRRN4Q8WUT4 740 aa10.79□□□□□ -0.68
CD44-227ENST00000528086 CASKIN2Q8WXE0 1202 aa10.79□□□□□ -0.68
CD44-227ENST00000528086 CENPTQ96BT3 561 aa10.79□□□□□ -0.68
CD44-227ENST00000528086 ECHDC3Q96DC8 303 aa10.79□□□□□ -0.68
CD44-227ENST00000528086 LRIG1Q96JA1 1093 aa10.79□□□□□ -0.68
CD44-227ENST00000528086 CCDC114Q96M63 670 aa10.79□□□□□ -0.68
CD44-227ENST00000528086 GDAP1L1Q96MZ0 367 aa10.79□□□□□ -0.68
CD44-227ENST00000528086 SLC17A9Q9BYT1 436 aa10.79□□□□□ -0.68
CD44-227ENST00000528086 SLC32A1Q9H598 525 aa10.79□□□□□ -0.68
CD44-227ENST00000528086 ERVMER34-1Q9H9K5 563 aa10.79□□□□□ -0.68
CD44-227ENST00000528086 DKK3Q9UBP4 350 aa10.79□□□□□ -0.68
CD44-227ENST00000528086 UBA2Q9UBT2 640 aaPredicted RBP10.79□□□□□ -0.68
CD44-227ENST00000528086 IP6K2Q9UHH9 426 aa10.79□□□□□ -0.68
CD44-227ENST00000528086 IPO11Q9UI26 975 aaKnown RBP10.79□□□□□ -0.68
CD44-227ENST00000528086 ANGPTL2Q9UKU9 493 aa10.79□□□□□ -0.68
CD44-227ENST00000528086 HPCAL4Q9UM19 191 aa10.79□□□□□ -0.68
CD44-227ENST00000528086 TFR2Q9UP52 801 aa10.79□□□□□ -0.68
CD44-227ENST00000528086 FARP1Q9Y4F1 1045 aaPredicted RBP10.79□□□□□ -0.68
CD44-227ENST00000528086 FAM221BA6H8Z2 402 aa10.78□□□□□ -0.68
CD44-227ENST00000528086 C3orf70A6NLC5 250 aaPredicted RBP10.78□□□□□ -0.68
CD44-227ENST00000528086 DFFAO00273 331 aa10.78□□□□□ -0.68
CD44-227ENST00000528086 TRIM38O00635 465 aa10.78□□□□□ -0.68
CD44-227ENST00000528086 MAFKO60675 156 aa10.78□□□□□ -0.68
CD44-227ENST00000528086 PROSCO94903 275 aa10.78□□□□□ -0.68
CD44-227ENST00000528086 HNRNPA2B1P22626 353 aaKnown RBP10.78□□□□□ -0.68
CD44-227ENST00000528086 CCT8P50990 548 aa10.78□□□□□ -0.68
CD44-227ENST00000528086 GEMIN4P57678 1058 aaKnown RBP10.78□□□□□ -0.68
CD44-227ENST00000528086 IL10RBQ08334 325 aa10.78□□□□□ -0.68
CD44-227ENST00000528086 SLC10A2Q12908 348 aaPredicted RBP10.78□□□□□ -0.68
CD44-227ENST00000528086 RALGDSQ12967 914 aa10.78□□□□□ -0.68
CD44-227ENST00000528086 DPYSL3Q14195 570 aa10.78□□□□□ -0.68
CD44-227ENST00000528086 SETMARQ53H47 684 aaPredicted RBP10.78□□□□□ -0.68
CD44-227ENST00000528086 KCTD16Q68DU8 428 aa10.78□□□□□ -0.68
CD44-227ENST00000528086 FBXL19Q6PCT2 694 aa10.78□□□□□ -0.68
CD44-227ENST00000528086 ADAT2Q7Z6V5 191 aaKnown RBP10.78□□□□□ -0.68
CD44-227ENST00000528086 RYBPQ8N488 228 aaPredicted RBP10.78□□□□□ -0.68
CD44-227ENST00000528086 SETD7Q8WTS6 366 aaKnown RBP10.78□□□□□ -0.68
CD44-227ENST00000528086 ADAMTS14Q8WXS8 1223 aa10.78□□□□□ -0.68
CD44-227ENST00000528086 FAF2Q96CS3 445 aa10.78□□□□□ -0.68
CD44-227ENST00000528086 NHEJ1Q9H9Q4 299 aaPredicted RBP10.78□□□□□ -0.68
CD44-227ENST00000528086 MBNL1Q9NR56 388 aaKnown RBP10.78□□□□□ -0.68
CD44-227ENST00000528086 KLHL11Q9NVR0 708 aa10.78□□□□□ -0.68
CD44-227ENST00000528086 UCKL1Q9NWZ5 548 aa10.78□□□□□ -0.68
CD44-227ENST00000528086 TPX2Q9ULW0 747 aaKnown RBP10.78□□□□□ -0.68
CD44-227ENST00000528086 RP1P56715 2156 aa10.77□□□□□ -0.68
CD44-227ENST00000528086 ZFHX4Q86UP3 3567 aa10.77□□□□□ -0.68
CD44-227ENST00000528086 LAMA5O15230 3695 aa10.77□□□□□ -0.68
CD44-227ENST00000528086 LY6G6EA0A0G2JKS1 128 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 ARHGAP42A6NI28 874 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 MYO1FO00160 1098 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 FLRT2O43155 660 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 MFSD11O43934 449 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 MMP20O60882 483 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 SDC3O75056 442 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 MTA2O94776 668 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 MAP3K6O95382 1288 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 IGSF6O95976 241 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 TMEM253P0C7T8 217 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 THEGLP0DJG4 465 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 IGFALSP35858 605 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 NUDT1P36639 197 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 CSNK1DP48730 415 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 CLDN6P56747 220 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 C21orf59P57076 290 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 PFN3P60673 137 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 RPS21P63220 83 aaKnown RBP10.77□□□□□ -0.69
CD44-227ENST00000528086 FZD2Q14332 565 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 TMEM52BQ4KMG9 183 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 ZNF542PQ5EBM4 170 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 NCBP2-AS2Q69YL0 99 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 KIAA1161Q6NSJ0 714 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 Q6ZSR6 202 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 SRLQ86TD4 932 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 ZNF354CQ86Y25 554 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 PELI3Q8N2H9 469 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 TP53I13Q8NBR0 393 aaPredicted RBP10.77□□□□□ -0.69
CD44-227ENST00000528086 RHBDD1Q8TEB9 315 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 RAPGEF5Q92565 580 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 RAB7BQ96AH8 199 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 KLHDC7BQ96G42 594 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 PPP1R16AQ96I34 528 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 LENG8Q96PV6 779 aaPredicted RBP10.77□□□□□ -0.69
CD44-227ENST00000528086 SMIM14Q96QK8 99 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 PSKH2Q96QS6 385 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 OSBPL1AQ9BXW6 950 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 SUV39H2Q9H5I1 410 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 PCDH12Q9NPG4 1184 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 DYRK4Q9NR20 520 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 GDF3Q9NR23 364 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 COQ6Q9Y2Z9 468 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 HS3ST3A1Q9Y663 406 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 U3KQA8 63 aa10.77□□□□□ -0.69
CD44-227ENST00000528086 A0A0U1RQS6 177 aa10.76□□□□□ -0.69
CD44-227ENST00000528086 H3BRJ5 948 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms