RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	ZNF324B	Q6AW86	544 aa	Predicted RBP	4.88	□□□□□ -1.63
CD44-223	ENST00000526553	RBM23	Q86U06	439 aa	Known RBP	4.88	□□□□□ -1.63
CD44-223	ENST00000526553	SFTPA2	Q8IWL1	248 aa		4.88	□□□□□ -1.63
CD44-223	ENST00000526553	NOC3L	Q8WTT2	800 aa	Known RBP	4.88	□□□□□ -1.63
CD44-223	ENST00000526553	RUFY2	Q8WXA3	655 aa		4.88	□□□□□ -1.63
CD44-223	ENST00000526553	USP13	Q92995	863 aa	Predicted RBP	4.88	□□□□□ -1.63
CD44-223	ENST00000526553	OTULIN	Q96BN8	352 aa		4.88	□□□□□ -1.63
CD44-223	ENST00000526553	ELP4	Q96EB1	424 aa		4.88	□□□□□ -1.63
CD44-223	ENST00000526553	GPR63	Q9BZJ6	419 aa		4.88	□□□□□ -1.63
CD44-223	ENST00000526553	CNOT7	Q9UIV1	285 aa	Known RBP	4.88	□□□□□ -1.63
CD44-223	ENST00000526553	LRP12	Q9Y561	859 aa		4.88	□□□□□ -1.63
CD44-223	ENST00000526553		A0A1B0GVM2	712 aa		4.87	□□□□□ -1.63
CD44-223	ENST00000526553	GAGE10	A6NGK3	116 aa		4.87	□□□□□ -1.63
CD44-223	ENST00000526553	TEX22	C9J3V5	150 aa		4.87	□□□□□ -1.63
CD44-223	ENST00000526553	CBSL	P0DN79	551 aa		4.87	□□□□□ -1.63
CD44-223	ENST00000526553	TGFB3	P10600	412 aa		4.87	□□□□□ -1.63
CD44-223	ENST00000526553	CBS	P35520	551 aa		4.87	□□□□□ -1.63
CD44-223	ENST00000526553	DSCR9	P59020	149 aa		4.87	□□□□□ -1.63
CD44-223	ENST00000526553	SEC61A1	P61619	476 aa	Known RBP	4.87	□□□□□ -1.63
CD44-223	ENST00000526553	HLF	Q16534	295 aa		4.87	□□□□□ -1.63
CD44-223	ENST00000526553	KLHL22	Q53GT1	634 aa		4.87	□□□□□ -1.63
CD44-223	ENST00000526553	FJX1	Q86VR8	437 aa		4.87	□□□□□ -1.63
CD44-223	ENST00000526553	NEXN-AS1	Q8NBZ9	246 aa		4.87	□□□□□ -1.63
CD44-223	ENST00000526553	NUDCD2	Q8WVJ2	157 aa		4.87	□□□□□ -1.63
CD44-223	ENST00000526553	MAEL	Q96JY0	434 aa	Known RBP	4.87	□□□□□ -1.63
CD44-223	ENST00000526553	TM6SF1	Q9BZW5	370 aa		4.87	□□□□□ -1.63
CD44-223	ENST00000526553	INTS2	Q9H0H0	1204 aa	Known RBP	4.87	□□□□□ -1.63
CD44-223	ENST00000526553	TMEM51	Q9NW97	253 aa		4.87	□□□□□ -1.63
CD44-223	ENST00000526553	BEX4	Q9NWD9	120 aa	Predicted RBP	4.87	□□□□□ -1.63
CD44-223	ENST00000526553	RRN3	Q9NYV6	651 aa		4.87	□□□□□ -1.63
CD44-223	ENST00000526553	HCN3	Q9P1Z3	774 aa		4.87	□□□□□ -1.63
CD44-223	ENST00000526553	NDRG3	Q9UGV2	375 aa		4.87	□□□□□ -1.63
CD44-223	ENST00000526553	EME2	A4GXA9	379 aa	Predicted RBP	4.86	□□□□□ -1.63
CD44-223	ENST00000526553	ACOT8	O14734	319 aa		4.86	□□□□□ -1.63
CD44-223	ENST00000526553	NCAM2	O15394	837 aa		4.86	□□□□□ -1.63
CD44-223	ENST00000526553	KCNJ13	O60928	360 aa		4.86	□□□□□ -1.63
CD44-223	ENST00000526553	SERPINI2	O75830	405 aa		4.86	□□□□□ -1.63
CD44-223	ENST00000526553	IFIT1	P09914	478 aa	Known RBP	4.86	□□□□□ -1.63
CD44-223	ENST00000526553	FGF3	P11487	239 aa	Predicted RBP	4.86	□□□□□ -1.63
CD44-223	ENST00000526553	FCGR1A	P12314	374 aa		4.86	□□□□□ -1.63
CD44-223	ENST00000526553	SRD5A1	P18405	259 aa		4.86	□□□□□ -1.63
CD44-223	ENST00000526553	C21orf33	P30042	268 aa	Predicted RBP	4.86	□□□□□ -1.63
CD44-223	ENST00000526553	MXI1	P50539	228 aa		4.86	□□□□□ -1.63
CD44-223	ENST00000526553	PLCB4	Q15147	1175 aa		4.86	□□□□□ -1.63
CD44-223	ENST00000526553	ZNF766	Q5HY98	468 aa		4.86	□□□□□ -1.63
CD44-223	ENST00000526553	ZNF667	Q5HYK9	610 aa		4.86	□□□□□ -1.63
CD44-223	ENST00000526553	NADSYN1	Q6IA69	706 aa		4.86	□□□□□ -1.63
CD44-223	ENST00000526553	NEK10	Q6ZWH5	1172 aa		4.86	□□□□□ -1.63
CD44-223	ENST00000526553	MOB3C	Q70IA8	216 aa		4.86	□□□□□ -1.63
CD44-223	ENST00000526553	FAM160B2	Q86V87	743 aa		4.86	□□□□□ -1.63
CD44-223	ENST00000526553	MB21D2	Q8IYB1	491 aa	Predicted RBP	4.86	□□□□□ -1.63
CD44-223	ENST00000526553	TEX19	Q8NA77	164 aa		4.86	□□□□□ -1.63
CD44-223	ENST00000526553	FAM84B	Q96KN1	310 aa	Predicted RBP	4.86	□□□□□ -1.63
CD44-223	ENST00000526553	TBATA	Q96M53	351 aa		4.86	□□□□□ -1.63
CD44-223	ENST00000526553	CTAGE1	Q96RT6	745 aa		4.86	□□□□□ -1.63
CD44-223	ENST00000526553	SLC25A33	Q9BSK2	321 aa		4.86	□□□□□ -1.63
CD44-223	ENST00000526553	SAGE1	Q9NXZ1	904 aa		4.86	□□□□□ -1.63
CD44-223	ENST00000526553	WWOX	Q9NZC7	414 aa		4.86	□□□□□ -1.63
CD44-223	ENST00000526553	IL1RAPL1	Q9NZN1	696 aa		4.86	□□□□□ -1.63
CD44-223	ENST00000526553	PEMT	Q9UBM1	199 aa		4.86	□□□□□ -1.63
CD44-223	ENST00000526553	DYTN	A2CJ06	578 aa		4.85	□□□□□ -1.63
CD44-223	ENST00000526553	TYW5	A2RUC4	315 aa	Known RBP	4.85	□□□□□ -1.63
CD44-223	ENST00000526553	TFPI	P10646	304 aa		4.85	□□□□□ -1.63
CD44-223	ENST00000526553	PCNA	P12004	261 aa		4.85	□□□□□ -1.63
CD44-223	ENST00000526553	SLC2A4	P14672	509 aa		4.85	□□□□□ -1.63
CD44-223	ENST00000526553	CNTF	P26441	200 aa		4.85	□□□□□ -1.63
CD44-223	ENST00000526553	CXCR3	P49682	368 aa		4.85	□□□□□ -1.63
CD44-223	ENST00000526553	EFNB1	P98172	346 aa		4.85	□□□□□ -1.63
CD44-223	ENST00000526553	CYP4A11	Q02928	519 aa		4.85	□□□□□ -1.63
CD44-223	ENST00000526553	TRAF3	Q13114	568 aa		4.85	□□□□□ -1.63
CD44-223	ENST00000526553	TRPC3	Q13507	836 aa		4.85	□□□□□ -1.63
CD44-223	ENST00000526553	RUNX2	Q13950	521 aa		4.85	□□□□□ -1.63
CD44-223	ENST00000526553	NFIL3	Q16649	462 aa		4.85	□□□□□ -1.63
CD44-223	ENST00000526553	SERTAD4-AS1	Q5TG53	156 aa		4.85	□□□□□ -1.63
CD44-223	ENST00000526553	TMED8	Q6PL24	325 aa	Predicted RBP	4.85	□□□□□ -1.63
CD44-223	ENST00000526553	KLHL24	Q6TFL4	600 aa		4.85	□□□□□ -1.63
CD44-223	ENST00000526553	TBC1D26	Q86UD7	250 aa		4.85	□□□□□ -1.63
CD44-223	ENST00000526553	TMTC1	Q8IUR5	882 aa		4.85	□□□□□ -1.63
CD44-223	ENST00000526553	CCDC105	Q8IYK2	499 aa		4.85	□□□□□ -1.63
CD44-223	ENST00000526553	AADAT	Q8N5Z0	425 aa		4.85	□□□□□ -1.63
CD44-223	ENST00000526553	TRIB2	Q92519	343 aa		4.85	□□□□□ -1.63
CD44-223	ENST00000526553	SNAPC3	Q92966	411 aa		4.85	□□□□□ -1.63
CD44-223	ENST00000526553	TXNDC15	Q96J42	360 aa		4.85	□□□□□ -1.63
CD44-223	ENST00000526553	FUZ	Q9BT04	418 aa		4.85	□□□□□ -1.63
CD44-223	ENST00000526553	SLCO5A1	Q9H2Y9	848 aa		4.85	□□□□□ -1.63
CD44-223	ENST00000526553	WDR26	Q9H7D7	661 aa		4.85	□□□□□ -1.63
CD44-223	ENST00000526553	KIAA1456	Q9P272	454 aa		4.85	□□□□□ -1.63
CD44-223	ENST00000526553	SLC25A10	Q9UBX3	287 aa	Predicted RBP	4.85	□□□□□ -1.63
CD44-223	ENST00000526553	GJD2	Q9UKL4	321 aa		4.85	□□□□□ -1.63
CD44-223	ENST00000526553	LRRFIP2	Q9Y608	721 aa	Known RBP	4.85	□□□□□ -1.63
CD44-223	ENST00000526553		A0A0U1RQF3	1178 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	CCDC196	A0A1B0GTZ2	297 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	RRN3P2	A6NIE6	340 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	HSPB2	A8KAH6	182 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	TIMM23	O14925	209 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	HOXC11	O43248	304 aa	Predicted RBP	4.84	□□□□□ -1.63
CD44-223	ENST00000526553	ATP2C2	O75185	946 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	PAPSS2	O95340	614 aa	Predicted RBP	4.84	□□□□□ -1.63
CD44-223	ENST00000526553	POLB	P06746	335 aa		4.84	□□□□□ -1.63
CD44-223	ENST00000526553	ZNF12	P17014	697 aa		4.84	□□□□□ -1.63

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