RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 KLK15Q9H2R5 256 aa7.75□□□□□ -1.17
LSM1-202ENST00000520286 MOV10Q9HCE1 1003 aaKnown RBP7.75□□□□□ -1.17
LSM1-202ENST00000520286 ASAH2Q9NR71 780 aa7.75□□□□□ -1.17
LSM1-202ENST00000520286 PACSIN3Q9UKS6 424 aa7.75□□□□□ -1.17
LSM1-202ENST00000520286 SESN1Q9Y6P5 492 aa7.75□□□□□ -1.17
LSM1-202ENST00000520286 KIF21BO75037 1637 aa7.74□□□□□ -1.17
LSM1-202ENST00000520286 TFP02787 698 aa7.74□□□□□ -1.17
LSM1-202ENST00000520286 KRT10P13645 584 aa7.74□□□□□ -1.17
LSM1-202ENST00000520286 CDAP32320 146 aa7.74□□□□□ -1.17
LSM1-202ENST00000520286 HDAC4P56524 1084 aa7.74□□□□□ -1.17
LSM1-202ENST00000520286 PSMC6P62333 389 aa7.74□□□□□ -1.17
LSM1-202ENST00000520286 SLC18A2Q05940 514 aa7.74□□□□□ -1.17
LSM1-202ENST00000520286 FGFBP1Q14512 234 aa7.74□□□□□ -1.17
LSM1-202ENST00000520286 RASA2Q15283 850 aa7.74□□□□□ -1.17
LSM1-202ENST00000520286 ALG11Q2TAA5 492 aa7.74□□□□□ -1.17
LSM1-202ENST00000520286 PRAMEF17Q5VTA0 474 aa7.74□□□□□ -1.17
LSM1-202ENST00000520286 SUMO4Q6EEV6 95 aa7.74□□□□□ -1.17
LSM1-202ENST00000520286 NAA16Q6N069 864 aaPredicted RBP7.74□□□□□ -1.17
LSM1-202ENST00000520286 IGFN1Q86VF2 1251 aa7.74□□□□□ -1.17
LSM1-202ENST00000520286 TDRPQ86YL5 185 aa7.74□□□□□ -1.17
LSM1-202ENST00000520286 DHX40Q8IX18 779 aaKnown RBP7.74□□□□□ -1.17
LSM1-202ENST00000520286 OR4N2Q8NGD1 307 aa7.74□□□□□ -1.17
LSM1-202ENST00000520286 SARAFQ96BY9 339 aa7.74□□□□□ -1.17
LSM1-202ENST00000520286 PABPC5Q96DU9 382 aaKnown RBP7.74□□□□□ -1.17
LSM1-202ENST00000520286 RADILQ96JH8 1075 aa7.74□□□□□ -1.17
LSM1-202ENST00000520286 BBS4Q96RK4 519 aa7.74□□□□□ -1.17
LSM1-202ENST00000520286 BAG1Q99933 345 aaPredicted RBP7.74□□□□□ -1.17
LSM1-202ENST00000520286 KIF9Q9HAQ2 790 aa7.74□□□□□ -1.17
LSM1-202ENST00000520286 CFDP1Q9UEE9 299 aaPredicted RBP7.74□□□□□ -1.17
LSM1-202ENST00000520286 GIMAP2Q9UG22 337 aa7.74□□□□□ -1.17
LSM1-202ENST00000520286 TLK1Q9UKI8 766 aa7.74□□□□□ -1.17
LSM1-202ENST00000520286 FAM96BQ9Y3D0 163 aa7.74□□□□□ -1.17
LSM1-202ENST00000520286 YEATS2Q9ULM3 1422 aa7.74□□□□□ -1.17
LSM1-202ENST00000520286 ZCCHC11Q5TAX3 1644 aaKnown RBP7.74□□□□□ -1.17
LSM1-202ENST00000520286 UGGT2Q9NYU1 1516 aa7.73□□□□□ -1.17
LSM1-202ENST00000520286 IQGAP2Q13576 1575 aa7.73□□□□□ -1.17
LSM1-202ENST00000520286 NPIPB11E5RHQ5 1161 aa7.73□□□□□ -1.17
LSM1-202ENST00000520286 SH2B2O14492 632 aaPredicted RBP7.73□□□□□ -1.17
LSM1-202ENST00000520286 KIF1CO43896 1103 aaKnown RBP7.73□□□□□ -1.17
LSM1-202ENST00000520286 TMCC1O94876 653 aa7.73□□□□□ -1.17
LSM1-202ENST00000520286 LCKP06239 509 aa7.73□□□□□ -1.17
LSM1-202ENST00000520286 RB1P06400 928 aa7.73□□□□□ -1.17
LSM1-202ENST00000520286 PRR35P0CG20 571 aa7.73□□□□□ -1.17
LSM1-202ENST00000520286 PTGER1P34995 402 aa7.73□□□□□ -1.17
LSM1-202ENST00000520286 CLCNKBP51801 687 aa7.73□□□□□ -1.17
LSM1-202ENST00000520286 SLC12A2P55011 1212 aa7.73□□□□□ -1.17
LSM1-202ENST00000520286 F2RL1P55085 397 aa7.73□□□□□ -1.17
LSM1-202ENST00000520286 CLDN2P57739 230 aa7.73□□□□□ -1.17
LSM1-202ENST00000520286 PROSER3Q2NL68 480 aa7.73□□□□□ -1.17
LSM1-202ENST00000520286 AAGABQ6PD74 315 aa7.73□□□□□ -1.17
LSM1-202ENST00000520286 FAM83HQ6ZRV2 1179 aaPredicted RBP7.73□□□□□ -1.17
LSM1-202ENST00000520286 TBC1D26Q86UD7 250 aa7.73□□□□□ -1.17
LSM1-202ENST00000520286 TRIM74Q86UV6 250 aa7.73□□□□□ -1.17
LSM1-202ENST00000520286 TRIM73Q86UV7 250 aa7.73□□□□□ -1.17
LSM1-202ENST00000520286 TICAM1Q8IUC6 712 aa7.73□□□□□ -1.17
LSM1-202ENST00000520286 CADM3Q8N126 398 aa7.73□□□□□ -1.17
LSM1-202ENST00000520286 SCML4Q8N228 414 aa7.73□□□□□ -1.17
LSM1-202ENST00000520286 OSR1Q8TAX0 266 aaPredicted RBP7.73□□□□□ -1.17
LSM1-202ENST00000520286 ATOH1Q92858 354 aaPredicted RBP7.73□□□□□ -1.17
LSM1-202ENST00000520286 PGAM5Q96HS1 289 aa7.73□□□□□ -1.17
LSM1-202ENST00000520286 PLEKHA4Q9H4M7 779 aa7.73□□□□□ -1.17
LSM1-202ENST00000520286 PLK2Q9NYY3 685 aa7.73□□□□□ -1.17
LSM1-202ENST00000520286 ABI3Q9P2A4 366 aa7.73□□□□□ -1.17
LSM1-202ENST00000520286 CARD8Q9Y2G2 431 aa7.73□□□□□ -1.17
LSM1-202ENST00000520286 DPPA5A6NC42 116 aa7.72□□□□□ -1.17
LSM1-202ENST00000520286 DDTLA6NHG4 134 aaPredicted RBP7.72□□□□□ -1.17
LSM1-202ENST00000520286 A8MV72 311 aaPredicted RBP7.72□□□□□ -1.17
LSM1-202ENST00000520286 GABRB1P18505 474 aa7.72□□□□□ -1.17
LSM1-202ENST00000520286 PMPCAQ10713 525 aa7.72□□□□□ -1.17
LSM1-202ENST00000520286 OLIG2Q13516 323 aa7.72□□□□□ -1.17
LSM1-202ENST00000520286 RUNX2Q13950 521 aa7.72□□□□□ -1.17
LSM1-202ENST00000520286 COL28A1Q2UY09 1125 aa7.72□□□□□ -1.17
LSM1-202ENST00000520286 BMP2KLQ5H9B9 411 aa7.72□□□□□ -1.17
LSM1-202ENST00000520286 RPUSD3Q6P087 351 aaKnown RBP7.72□□□□□ -1.17
LSM1-202ENST00000520286 FBXO42Q6P3S6 717 aa7.72□□□□□ -1.17
LSM1-202ENST00000520286 TEX11Q8IYF3 940 aa7.72□□□□□ -1.17
LSM1-202ENST00000520286 ADGRF4Q8IZF3 695 aa7.72□□□□□ -1.17
LSM1-202ENST00000520286 RASSF8Q8NHQ8 419 aa7.72□□□□□ -1.17
LSM1-202ENST00000520286 UBE2Q2Q8WVN8 375 aa7.72□□□□□ -1.17
LSM1-202ENST00000520286 MAP4K1Q92918 833 aa7.72□□□□□ -1.17
LSM1-202ENST00000520286 ZMAT2Q96NC0 199 aaKnown RBP7.72□□□□□ -1.17
LSM1-202ENST00000520286 PRRX2Q99811 253 aa7.72□□□□□ -1.17
LSM1-202ENST00000520286 NCAPGQ9BPX3 1015 aa7.72□□□□□ -1.17
LSM1-202ENST00000520286 MORF4L1Q9UBU8 362 aa7.72□□□□□ -1.17
LSM1-202ENST00000520286 LOC100996750A0A140TA64 210 aa7.71□□□□□ -1.18
LSM1-202ENST00000520286 TSPY2A6NKD2 308 aa7.71□□□□□ -1.18
LSM1-202ENST00000520286 EBAG9O00559 213 aa7.71□□□□□ -1.18
LSM1-202ENST00000520286 RNMTO43148 476 aaKnown RBP7.71□□□□□ -1.18
LSM1-202ENST00000520286 SEC14L5O43304 696 aa7.71□□□□□ -1.18
LSM1-202ENST00000520286 ENTPD3O75355 529 aa7.71□□□□□ -1.18
LSM1-202ENST00000520286 WNT1P04628 370 aa7.71□□□□□ -1.18
LSM1-202ENST00000520286 CD63P08962 238 aa7.71□□□□□ -1.18
LSM1-202ENST00000520286 HOXB5P09067 269 aa7.71□□□□□ -1.18
LSM1-202ENST00000520286 TSPY3P0CV98 308 aa7.71□□□□□ -1.18
LSM1-202ENST00000520286 TSPY8P0CW00 308 aa7.71□□□□□ -1.18
LSM1-202ENST00000520286 PCNAP12004 261 aa7.71□□□□□ -1.18
LSM1-202ENST00000520286 KRT4P19013 534 aa7.71□□□□□ -1.18
LSM1-202ENST00000520286 SAT1P21673 171 aa7.71□□□□□ -1.18
LSM1-202ENST00000520286 CIITAP33076 1130 aa7.71□□□□□ -1.18
LSM1-202ENST00000520286 MRPL12P52815 198 aaKnown RBP7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms