RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 PLXNA2O75051 1894 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 SPTY2D1-AS1A0A0U1RR47 76 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 A0A1W2PQJ5 194 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 H3BRJ5 948 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 J3KR12 359 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 TAF4O00268 1085 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 AREL1O15033 823 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 SCAMP1O15126 338 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 INSIG1O15503 277 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 PRAMEF11O60813 436 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 MMP20O60882 483 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 CSF2P04141 144 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 CAPNS1P04632 268 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 ERCC2P18074 760 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 ACP1P24666 158 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 ARL4AP40617 200 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 HCAR3P49019 387 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 DUSP3P51452 185 aaPredicted RBP13.82□□□□□ -0.2
TCOF1-215ENST00000515516 CYP4F3Q08477 520 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 FZD2Q14332 565 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 NFKBIBQ15653 356 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 CA9Q16790 459 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 PROX2Q3B8N5 592 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 BOLA3Q53S33 107 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 LRRC73Q5JTD7 316 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 HES3Q5TGS1 186 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 E4F1Q66K89 784 aaPredicted RBP13.82□□□□□ -0.2
TCOF1-215ENST00000515516 LZTR1Q8N653 840 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 CPLX3Q8WVH0 158 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 BTN2A2Q8WVV5 523 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 SYN2Q92777 582 aaPredicted RBP13.82□□□□□ -0.2
TCOF1-215ENST00000515516 ZNF641Q96N77 438 aaPredicted RBP13.82□□□□□ -0.2
TCOF1-215ENST00000515516 TUBGCP5Q96RT8 1024 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 PEBP4Q96S96 227 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 KLF6Q99612 283 aaPredicted RBP13.82□□□□□ -0.2
TCOF1-215ENST00000515516 WRAP53Q9BUR4 548 aaKnown RBP13.82□□□□□ -0.2
TCOF1-215ENST00000515516 CINPQ9BW66 212 aaPredicted RBP13.82□□□□□ -0.2
TCOF1-215ENST00000515516 TRIM7Q9C029 511 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 ISCUQ9H1K1 167 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 ATP13A3Q9H7F0 1226 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 LHX3Q9UBR4 397 aa13.82□□□□□ -0.2
TCOF1-215ENST00000515516 TOR1BO14657 336 aa13.81□□□□□ -0.2
TCOF1-215ENST00000515516 LRCH4O75427 683 aa13.81□□□□□ -0.2
TCOF1-215ENST00000515516 PIGNO95427 931 aa13.81□□□□□ -0.2
TCOF1-215ENST00000515516 SERPING1P05155 500 aa13.81□□□□□ -0.2
TCOF1-215ENST00000515516 TPM3P06753 285 aa13.81□□□□□ -0.2
TCOF1-215ENST00000515516 NME1P15531 152 aaKnown RBP13.81□□□□□ -0.2
TCOF1-215ENST00000515516 JUNDP17535 347 aa13.81□□□□□ -0.2
TCOF1-215ENST00000515516 SERPINA4P29622 427 aa13.81□□□□□ -0.2
TCOF1-215ENST00000515516 PCK1P35558 622 aa13.81□□□□□ -0.2
TCOF1-215ENST00000515516 YPEL5P62699 121 aa13.81□□□□□ -0.2
TCOF1-215ENST00000515516 ZBED6P86452 979 aa13.81□□□□□ -0.2
TCOF1-215ENST00000515516 TARDBPQ13148 414 aaKnown RBP eCLIP13.81□□□□□ -0.2
TCOF1-215ENST00000515516 PIGHQ14442 188 aaPredicted RBP13.81□□□□□ -0.2
TCOF1-215ENST00000515516 RFTN1Q14699 578 aaPredicted RBP13.81□□□□□ -0.2
TCOF1-215ENST00000515516 BRAT1Q6PJG6 821 aa13.81□□□□□ -0.2
TCOF1-215ENST00000515516 SRLQ86TD4 932 aa13.81□□□□□ -0.2
TCOF1-215ENST00000515516 ARFGAP1Q8N6T3 406 aa13.81□□□□□ -0.2
TCOF1-215ENST00000515516 CENPTQ96BT3 561 aa13.81□□□□□ -0.2
TCOF1-215ENST00000515516 NXPE2Q96DL1 559 aa13.81□□□□□ -0.2
TCOF1-215ENST00000515516 PDFQ9HBH1 243 aa13.81□□□□□ -0.2
TCOF1-215ENST00000515516 USP29Q9HBJ7 922 aa13.81□□□□□ -0.2
TCOF1-215ENST00000515516 NCKIPSDQ9NZQ3 722 aa13.81□□□□□ -0.2
TCOF1-215ENST00000515516 DKK4Q9UBT3 224 aa13.81□□□□□ -0.2
TCOF1-215ENST00000515516 LUC7L2Q9Y383 392 aaKnown RBP13.81□□□□□ -0.2
TCOF1-215ENST00000515516 AK5Q9Y6K8 562 aa13.81□□□□□ -0.2
TCOF1-215ENST00000515516 USP24Q9UPU5 2620 aa13.81□□□□□ -0.2
TCOF1-215ENST00000515516 LZTS3O60299 673 aaPredicted RBP13.8□□□□□ -0.2
TCOF1-215ENST00000515516 CKMT1AP12532 417 aa13.8□□□□□ -0.2
TCOF1-215ENST00000515516 CSNK1DP48730 415 aa13.8□□□□□ -0.2
TCOF1-215ENST00000515516 RENBPP51606 427 aa13.8□□□□□ -0.2
TCOF1-215ENST00000515516 PFN3P60673 137 aa13.8□□□□□ -0.2
TCOF1-215ENST00000515516 IL10RBQ08334 325 aa13.8□□□□□ -0.2
TCOF1-215ENST00000515516 CAMK2BQ13554 666 aa13.8□□□□□ -0.2
TCOF1-215ENST00000515516 LRRC14Q15048 493 aa13.8□□□□□ -0.2
TCOF1-215ENST00000515516 UGP2Q16851 508 aa13.8□□□□□ -0.2
TCOF1-215ENST00000515516 TMEM52BQ4KMG9 183 aa13.8□□□□□ -0.2
TCOF1-215ENST00000515516 ZNF548Q8NEK5 533 aaPredicted RBP13.8□□□□□ -0.2
TCOF1-215ENST00000515516 LMX1AQ8TE12 382 aa13.8□□□□□ -0.2
TCOF1-215ENST00000515516 HSPH1Q92598 858 aa13.8□□□□□ -0.2
TCOF1-215ENST00000515516 GLMNQ92990 594 aa13.8□□□□□ -0.2
TCOF1-215ENST00000515516 IL12RB2Q99665 862 aa13.8□□□□□ -0.2
TCOF1-215ENST00000515516 SLC13A1Q9BZW2 595 aa13.8□□□□□ -0.2
TCOF1-215ENST00000515516 ABCG4Q9H172 646 aa13.8□□□□□ -0.2
TCOF1-215ENST00000515516 PCDH12Q9NPG4 1184 aa13.8□□□□□ -0.2
TCOF1-215ENST00000515516 GPR27Q9NS67 375 aa13.8□□□□□ -0.2
TCOF1-215ENST00000515516 CWC15Q9P013 229 aaKnown RBP13.8□□□□□ -0.2
TCOF1-215ENST00000515516 SPASTQ9UBP0 616 aa13.8□□□□□ -0.2
TCOF1-215ENST00000515516 IP6K2Q9UHH9 426 aa13.8□□□□□ -0.2
TCOF1-215ENST00000515516 CAPN11Q9UMQ6 739 aa13.8□□□□□ -0.2
TCOF1-215ENST00000515516 LHX6Q9UPM6 363 aa13.8□□□□□ -0.2
TCOF1-215ENST00000515516 CLCA2Q9UQC9 943 aa13.8□□□□□ -0.2
TCOF1-215ENST00000515516 RAXQ9Y2V3 346 aa13.8□□□□□ -0.2
TCOF1-215ENST00000515516 CSNK1G3Q9Y6M4 447 aa13.8□□□□□ -0.2
TCOF1-215ENST00000515516 KNL1Q8NG31 2342 aa13.8□□□□□ -0.2
TCOF1-215ENST00000515516 NYNRINQ9P2P1 1898 aaKnown RBP13.79□□□□□ -0.2
TCOF1-215ENST00000515516 TMEM110-MUSTN1A8MSY1 372 aa13.79□□□□□ -0.2
TCOF1-215ENST00000515516 K7ESM1 405 aa13.79□□□□□ -0.2
TCOF1-215ENST00000515516 RIOK3O14730 519 aaKnown RBP13.79□□□□□ -0.2
TCOF1-215ENST00000515516 SPINT1O43278 529 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms