RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 GK5Q6ZS86 529 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 ANKS1BQ7Z6G8 1248 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 SIAH1Q8IUQ4 282 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 PIK3R5Q8WYR1 880 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 LENG8Q96PV6 779 aaPredicted RBP12.77□□□□□ -0.36
USP53-209ENST00000514665 UGT2B28Q9BY64 529 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 MCM8Q9UJA3 840 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 FAM208AQ9UK61 1670 aaKnown RBP12.77□□□□□ -0.36
USP53-209ENST00000514665 CORO1CQ9ULV4 474 aaPredicted RBP12.77□□□□□ -0.36
USP53-209ENST00000514665 TRAF6Q9Y4K3 522 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 NT5C1B-RDH14C9J2C7 533 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 C9JVG2 144 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 MDM4O15151 490 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 TREHO43280 583 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 LGR5O75473 907 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 MSH3P20585 1137 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 RPL5P46777 297 aaKnown RBP12.77□□□□□ -0.36
USP53-209ENST00000514665 TUFMP49411 452 aaKnown RBP12.77□□□□□ -0.36
USP53-209ENST00000514665 CRYBB1P53674 252 aaPredicted RBP12.77□□□□□ -0.36
USP53-209ENST00000514665 CDK18Q07002 472 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 ACSM2AQ08AH3 577 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 CCDC15Q0P6D6 951 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 RALGDSQ12967 914 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 PSMD5Q16401 504 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 DUSP28Q4G0W2 176 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 RNF220Q5VTB9 566 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 ACSM2BQ68CK6 577 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 FAM45BPQ6NSW5 357 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 DLK2Q6UY11 383 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 KBTBD2Q8IY47 623 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 ZNF567Q8N184 647 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 CFAP52Q8N1V2 620 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 STX19Q8N4C7 294 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 ZNF276Q8N554 614 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 DCBLD1Q8N8Z6 715 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 FAM45AQ8TCE6 357 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 CLEC4CQ8WTT0 213 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 ABHD8Q96I13 439 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 MLPHQ9BV36 600 aaPredicted RBP12.77□□□□□ -0.36
USP53-209ENST00000514665 GIMAP4Q9NUV9 329 aa12.77□□□□□ -0.36
USP53-209ENST00000514665 MTF2Q9Y483 593 aaPredicted RBP12.77□□□□□ -0.36
USP53-209ENST00000514665 TCRBV7S3A2A0A539 114 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 TK2O00142 265 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 AZIN1O14977 448 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 METTL18O95568 372 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 CSH1P0DML2 217 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 CSH2P0DML3 217 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 TYMPP19971 482 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 RRM2P31350 389 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 GCNT7Q6ZNI0 430 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 HEATR4Q86WZ0 1026 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 DENND1CQ8IV53 801 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 NKAPQ8N5F7 415 aaKnown RBP12.77□□□□□ -0.37
USP53-209ENST00000514665 C7orf26Q96N11 449 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 GATA5Q9BWX5 397 aaPredicted RBP12.77□□□□□ -0.37
USP53-209ENST00000514665 ABCG8Q9H221 673 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 STN1Q9H668 368 aaKnown RBP12.77□□□□□ -0.37
USP53-209ENST00000514665 WASF2Q9Y6W5 498 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 TSPAN1O60635 241 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 FAM20BO75063 409 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 MT-CYBP00156 380 aaPredicted RBP12.77□□□□□ -0.37
USP53-209ENST00000514665 CCDC159P0C7I6 412 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 LMO2P25791 158 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 MAD2L1Q13257 205 aaPredicted RBP12.77□□□□□ -0.37
USP53-209ENST00000514665 MAPKAPK3Q16644 382 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 B3GNT6Q6ZMB0 384 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 TDRPQ86YL5 185 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 BANPQ8N9N5 519 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 SLC35B2Q8TB61 432 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 YIPF2Q9BWQ6 316 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 FAM126AQ9BYI3 521 aaPredicted RBP12.77□□□□□ -0.37
USP53-209ENST00000514665 POLR1BQ9H9Y6 1135 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 CACNA2D2Q9NY47 1150 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 LNPEPQ9UIQ6 1025 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 PCDHB9Q9Y5E1 797 aa12.77□□□□□ -0.37
USP53-209ENST00000514665 RGPD8O14715 1765 aaPredicted RBP12.76□□□□□ -0.37
USP53-209ENST00000514665 KPNA3O00505 521 aaPredicted RBP12.76□□□□□ -0.37
USP53-209ENST00000514665 RGS14O43566 566 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 LRIG2O94898 1065 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 GRIA1P42261 906 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 MPP1Q00013 466 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 IRF8Q02556 426 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 GAD2Q05329 585 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 PRKG2Q13237 762 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 RBM44Q6ZP01 1051 aaKnown RBP12.76□□□□□ -0.37
USP53-209ENST00000514665 CLYBLQ8N0X4 340 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 TOP6BLQ8N6T0 577 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 PPTC7Q8NI37 304 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 TWNKQ96RR1 684 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 AAASQ9NRG9 546 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 KRT84Q9NSB2 600 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 MED1Q15648 1581 aaPredicted RBP12.76□□□□□ -0.37
USP53-209ENST00000514665 FMN2Q9NZ56 1722 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 MBTD1Q05BQ5 628 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 BTG3Q14201 252 aaPredicted RBP12.76□□□□□ -0.37
USP53-209ENST00000514665 CPSF6Q16630 551 aaKnown RBP eCLIP12.76□□□□□ -0.37
USP53-209ENST00000514665 RFWD3Q6PCD5 774 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 ARHGAP22Q7Z5H3 698 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 CUZD1Q86UP6 607 aa12.76□□□□□ -0.37
USP53-209ENST00000514665 ATAD1Q8NBU5 361 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms