RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 FAM213AQ9BRX8 229 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 MRPL47Q9HD33 250 aaKnown RBP7.5□□□□□ -1.21
CLIP1-205ENST00000514271 SUCOQ9UBS9 1254 aaKnown RBP7.5□□□□□ -1.21
CLIP1-205ENST00000514271 MRPS23Q9Y3D9 190 aaKnown RBP7.5□□□□□ -1.21
CLIP1-205ENST00000514271 MATN2O00339 956 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 PLOD2O00469 737 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 NRP1O14786 923 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 ADH1AP07327 375 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 MLNP12872 115 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 TBXAS1P24557 533 aaPredicted RBP7.5□□□□□ -1.21
CLIP1-205ENST00000514271 SLC11A1P49279 550 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 NDUFV1P49821 464 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 POLE2P56282 527 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 OTUD4Q01804 1114 aaKnown RBP7.5□□□□□ -1.21
CLIP1-205ENST00000514271 ACBD5Q5T8D3 534 aaPredicted RBP7.5□□□□□ -1.21
CLIP1-205ENST00000514271 OTUD1Q5VV17 481 aaPredicted RBP7.5□□□□□ -1.21
CLIP1-205ENST00000514271 IL23RQ5VWK5 629 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 FUT10Q6P4F1 479 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 SPPL3Q8TCT6 385 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 ZNF606Q8WXB4 792 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 PYDC1Q8WXC3 89 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 BHMTQ93088 406 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 TTC17Q96AE7 1141 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 TMIGD2Q96BF3 282 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 NPLQ9BXD5 320 aaPredicted RBP7.5□□□□□ -1.21
CLIP1-205ENST00000514271 MRPL17Q9NRX2 175 aaKnown RBP7.5□□□□□ -1.21
CLIP1-205ENST00000514271 TMEM98Q9Y2Y6 226 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 SH3GLB1Q9Y371 365 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 COL4A2P08572 1712 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 H3BSA7 217 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 LILRB3O75022 631 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 TNFAIP8O95379 198 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 APOEP02649 317 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 CXCL8P10145 99 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 SLC25A3Q00325 362 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 TRPC3Q13507 836 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 PTPN20Q4JDL3 420 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 PDCD4Q53EL6 469 aaKnown RBP7.5□□□□□ -1.21
CLIP1-205ENST00000514271 C9orf57Q5W0N0 161 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 PPP4R4Q6NUP7 873 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 ZFP1Q6P2D0 407 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 PACS1Q6VY07 963 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 UNC93AQ86WB7 457 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 CCDC25Q86WR0 208 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 RNF169Q8NCN4 708 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 ACTL9Q8TC94 416 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 DYDC1Q8WWB3 177 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 NT5C1BQ96P26 610 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 SIGLEC11Q96RL6 698 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 PKP2Q99959 881 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 IL22Q9GZX6 179 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 RPF2Q9H7B2 306 aaKnown RBP7.5□□□□□ -1.21
CLIP1-205ENST00000514271 CAPN10Q9HC96 672 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 RIC8BQ9NVN3 520 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 FAM32AQ9Y421 112 aaKnown RBP7.5□□□□□ -1.21
CLIP1-205ENST00000514271 NME7Q9Y5B8 376 aa7.5□□□□□ -1.21
CLIP1-205ENST00000514271 TCRBV5S2A0A599 114 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 TMEM114B3SHH9 223 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 ATP6V1G1O75348 118 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 JRKO75564 520 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 HNRNPA1P09651 372 aaKnown RBP eCLIP7.49□□□□□ -1.21
CLIP1-205ENST00000514271 ESRRAP11474 423 aaPredicted RBP7.49□□□□□ -1.21
CLIP1-205ENST00000514271 MYCLP1P12525 358 aaPredicted RBP7.49□□□□□ -1.21
CLIP1-205ENST00000514271 PFKLP17858 780 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 PCSK1P29120 753 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 GNL1P36915 607 aaPredicted RBP7.49□□□□□ -1.21
CLIP1-205ENST00000514271 AQP5P55064 265 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 SLC14A2Q15849 920 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 SLC36A3Q495N2 470 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 INTS11Q5TA45 600 aaKnown RBP7.49□□□□□ -1.21
CLIP1-205ENST00000514271 BNC2Q6ZN30 1099 aaPredicted RBP7.49□□□□□ -1.21
CLIP1-205ENST00000514271 NCCRP1Q6ZVX7 275 aaPredicted RBP7.49□□□□□ -1.21
CLIP1-205ENST00000514271 HPS6Q86YV9 775 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 DCP1BQ8IZD4 617 aaKnown RBP7.49□□□□□ -1.21
CLIP1-205ENST00000514271 E2F7Q96AV8 911 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 SH3KBP1Q96B97 665 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 ZBTB45Q96K62 511 aaPredicted RBP7.49□□□□□ -1.21
CLIP1-205ENST00000514271 TTPALQ9BTX7 342 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 HEMGNQ9BXL5 484 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 TMEM181Q9P2C4 612 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 MTRRQ9UBK8 725 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 DCTN4Q9UJW0 460 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 NEU3Q9UQ49 428 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 MTCL1Q9Y4B5 1905 aaKnown RBP7.49□□□□□ -1.21
CLIP1-205ENST00000514271 IQANK1A0A1B0GTG1 560 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 CAPN8A6NHC0 703 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 AXIN1O15169 862 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 AKAP10O43572 662 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 OAZ2O95190 189 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 WARSP23381 471 aaKnown RBP7.49□□□□□ -1.21
CLIP1-205ENST00000514271 OR1G1P47890 313 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 NRLP54845 237 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 MED21Q13503 144 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 DCTN2Q13561 401 aaKnown RBP7.49□□□□□ -1.21
CLIP1-205ENST00000514271 ACAP2Q15057 778 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 OXA1LQ15070 435 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 STILQ15468 1287 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 RAB6CQ53S08 254 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 JADE1Q6IE81 842 aa7.49□□□□□ -1.21
CLIP1-205ENST00000514271 CCDC149Q6ZUS6 474 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms