RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 FAM35AQ86V20 835 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 TOP6BLQ8N6T0 577 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 ITFG1Q8TB96 612 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 C12orf42Q96LP6 360 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 ACOX2Q99424 681 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 HGH1Q9BTY7 390 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 HAPLN2Q9GZV7 340 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 UNC93B1Q9H1C4 597 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 CACYBPQ9HB71 228 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 TIMMDC1Q9NPL8 285 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 ABCC13Q9NSE7 274 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 LIMD1Q9UGP4 676 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 PCDHGB4Q9UN71 923 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 TSC22D4Q9Y3Q8 395 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 CCNT2O60583 730 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 ZBTB48P10074 688 aaPredicted RBP8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 NDUFV1P49821 464 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 VAC14Q08AM6 782 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 BFSP2Q13515 415 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 ZNF460Q14592 562 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 PCLAFQ15004 111 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 MFSD14CQ5VZR4 134 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 ARHGAP17Q68EM7 881 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 FAM45BPQ6NSW5 357 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 ZDHHC13Q8IUH4 622 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 SPATA22Q8NHS9 363 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 STAG3L4Q8TBR4 150 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 FAM45AQ8TCE6 357 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 ZFAND2BQ8WV99 257 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 MAGED4Q96JG8 741 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 SH3GL1Q99961 368 aa8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.48□□□□□ -1.05
LIMCH1-216ENST00000512820 BHMG1C9JSJ3 638 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 PTGES3LE9PB15 166 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 AZIN1O14977 448 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 DDNO94850 711 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 FGF3P11487 239 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 OR1E1P30953 314 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 RAB27AP51159 221 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 NEK2P51955 445 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 OXCT1P55809 520 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 MAXP61244 160 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 IL5RAQ01344 420 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 POLD3Q15054 466 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 CMPK2Q5EBM0 449 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 CDCA2Q69YH5 1023 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 DNAJC1Q96KC8 554 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 OXSMQ9NWU1 459 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 CDH9Q9ULB4 789 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 SLC8A2Q9UPR5 921 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 PSAT1Q9Y617 370 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 NRCAMQ92823 1304 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 A0A0J9YYE9 177 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 TSPAN3O60637 253 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 RGS20O76081 388 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 C22orf31O95567 290 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 IRF1P10914 325 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 GM2AP17900 193 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 USP46P62068 366 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 SNX17Q15036 470 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 HDAC10Q969S8 669 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 PIWIL1Q96J94 861 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 TRMOQ9BU70 441 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 TLE6Q9H808 572 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 COQ10BQ9H8M1 238 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 SCUBE2Q9NQ36 999 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 ATP11BQ9Y2G3 1177 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 PDHXO00330 501 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 SNAP91O60641 907 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 LINC00032P0C843 101 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 SMIM10L2AP0DMW4 78 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 SMIM10L2BP0DMW5 78 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 PSEN2P49810 448 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 ILF2Q12905 390 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 ZNF177Q13360 481 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 LPIN1Q14693 890 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 TAF1CQ15572 869 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 ESRP1Q6NXG1 681 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 DNAJC14Q6Y2X3 702 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 DENND6AQ8IWF6 608 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 KIAA2013Q8IYS2 634 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 FAM120BQ96EK7 910 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 UGT2B28Q9BY64 529 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 CATSPERZQ9NTU4 200 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 DDX28Q9NUL7 540 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 DAPK2Q9UIK4 370 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 CRLS1Q9UJA2 301 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 ZNF112Q9UJU3 913 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 A0A088AWK7 358 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 ZNF682O95780 498 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 SLC11A2P49281 568 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 SCNN1GP51170 649 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 TNK2Q07912 1038 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 PSMD5Q16401 504 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 REP15Q6BDI9 236 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 IQSEC1Q6DN90 963 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 EPGNQ6UW88 154 aa8.47□□□□□ -1.05
LIMCH1-216ENST00000512820 SCIMPQ6UWF3 145 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms