RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 UQCRBP14927 111 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 TBX4P57082 545 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 C10orf120Q5SQS8 335 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 RNF220Q5VTB9 566 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 C16orf89Q6UX73 402 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 TFAP2DQ7Z6R9 452 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 ATPAF2Q8N5M1 289 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 CNTD1Q8N815 330 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 CNDP1Q96KN2 507 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 TEKT5Q96M29 485 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 TSNARE1Q96NA8 513 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 TOX2Q96NM4 488 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 APOL2Q9BQE5 337 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 MLPHQ9BV36 600 aaPredicted RBP11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 SLC39A8Q9C0K1 460 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 ILKAPQ9H0C8 392 aaPredicted RBP11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 CWH43Q9H720 699 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 CCSER2Q9H7U1 834 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 PNPOQ9NVS9 261 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 C6orf203Q9P0P8 240 aaPredicted RBP11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 VTI1BQ9UEU0 232 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 VPS28Q9UK41 221 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 PPM1HQ9ULR3 514 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 TNRC18O15417 2968 aaPredicted RBP11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 H7C4K7 107 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 MAFKO60675 156 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 RTN3O95197 1032 aaPredicted RBP11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 EFEMP2O95967 443 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 PRKCGP05129 697 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 NCF2P19878 526 aaPredicted RBP11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 ITGB8P26012 769 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 OR1D2P34982 312 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 NUMBP49757 651 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 MTTPP55157 894 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 MLLT6P55198 1093 aaPredicted RBP11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 ITGA9Q13797 1035 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 IKBKEQ14164 716 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 MS4A13Q5J8X5 152 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 KCTD11Q693B1 232 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 CES3Q6UWW8 571 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 OTOP3Q7RTS5 596 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 STRA8Q7Z7C7 330 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 DCLK2Q8N568 766 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 CATSPER1Q8NEC5 780 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 SLC26A7Q8TE54 656 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 SPATA17Q96L03 361 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 TRIM4Q9C037 500 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 CATSPERBQ9H7T0 1116 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 VCX3AQ9NNX9 186 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 CASS4Q9NQ75 786 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 TLR8Q9NR97 1041 aaKnown RBP11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 CLIC5Q9NZA1 410 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 MARCH2Q9P0N8 246 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 POMPQ9Y244 141 aa11.14□□□□□ -0.63
SH3RF1-203ENST00000508685 GREB1Q4ZG55 1949 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 COL6A2P12110 1019 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 TBL3Q12788 808 aaKnown RBP11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 KLF10Q13118 480 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 USP41Q3LFD5 358 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 AP1ARQ63HQ0 302 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 SLC8B1Q6J4K2 584 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 ZFP1Q6P2D0 407 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 CNKSR3Q6P9H4 555 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 MAVSQ7Z434 540 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 CLEC14AQ86T13 490 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 KBTBD6Q86V97 674 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 DEFB107AQ8IZN7 70 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 RTL3Q8N8U3 475 aaKnown RBP11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 SPATA22Q8NHS9 363 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 RP9Q8TA86 221 aaKnown RBP11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 IGSF21Q96ID5 467 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 Q9H521 79 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 COG4Q9H9E3 785 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 TMEM39AQ9NV64 488 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 NYNRINQ9P2P1 1898 aaKnown RBP11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 A0A096LPK6 155 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 RGSL1A5PLK6 1076 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 AP1G1O43747 822 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 TLR5O60602 858 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 CNTN5O94779 1100 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 PARNO95453 639 aaKnown RBP11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 TOP3BO95985 862 aaKnown RBP11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 MT-CYBP00156 380 aaPredicted RBP11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 ERVK-10P10266 1014 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 ITGAXP20702 1163 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 DEFB103AP81534 67 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 ZNF33AQ06730 810 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 CUL3Q13618 768 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 CCNIQ14094 377 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 PRPSAP1Q14558 356 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 HERC3Q15034 1050 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 ANKRD20A4Q4UJ75 823 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 ALFQ53S48 1182 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 THEMIS2Q5TEJ8 643 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 RAP1GAP2Q684P5 730 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 LINC00523Q86TU6 105 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 CIR1Q86X95 450 aaPredicted RBP11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 ZNF683Q8IZ20 524 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 DNAAF3Q8N9W5 541 aa11.13□□□□□ -0.63
SH3RF1-203ENST00000508685 ZNF669Q96BR6 464 aaPredicted RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms