RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 AP3M1Q9Y2T2 418 aa10.86□□□□□ -0.67
LIMCH1-205ENST00000503057 ARL5CA6NH57 179 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 MATN3O15232 486 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 CD3EAPO15446 510 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 GUCA1CO95843 209 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 CYP2A7P20853 494 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 DGKAP23743 735 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 NDUFV1P49821 464 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 SLC5A3P53794 718 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 PLIN5Q00G26 463 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 DDR2Q16832 855 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 PGS1Q32NB8 556 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 PPM1JQ5JR12 505 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 CYP2R1Q6VVX0 501 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 ZSCAN18Q8TBC5 510 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 MIEF2Q96C03 454 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 PANX3Q96QZ0 392 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 TEX264Q9Y6I9 313 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 CARNS1A5YM72 827 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 LRIG2O94898 1065 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 ATXN1P54253 815 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 KLF10Q13118 480 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 FSTL4Q6MZW2 842 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 RGMBQ6NW40 437 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 ADCK1Q86TW2 530 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 TAC4Q86UU9 113 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 OR4L1Q8NH43 312 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 MLPHQ9BV36 600 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 TXLNGYQ9BZA5 131 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 MYRFQ9Y2G1 1151 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 TCAF1Q9Y4C2 921 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 UNCXA6NJT0 531 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 FAM159BA6NKW6 160 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 INPP4BO15327 924 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 MSI1O43347 362 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 LDLRP01130 860 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 RHOQP17081 205 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 MZF1P28698 734 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 MAXP61244 160 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 SIX1Q15475 284 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 RHBDF2Q6PJF5 856 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 C16orf59Q7L2K0 433 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 SPATA16Q9BXB7 569 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 DENND2DQ9H6A0 471 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 PCDHB12Q9Y5F1 795 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 KIAA1551Q9HCM1 1747 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 IGKV6D-21A0A0A0MT36 114 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 KATNA1O75449 491 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 OR56A5P0C7T3 313 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 PAX7P23759 505 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 MPSTP25325 297 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 OLFML2BQ68BL8 750 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 TRPC4APQ8TEL6 797 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 HDAC10Q969S8 669 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 FAM120BQ96EK7 910 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 CADM1Q9BY67 442 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 FAM126AQ9BYI3 521 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 XYLT2Q9H1B5 865 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 PARVBQ9HBI1 364 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 S100A14Q9HCY8 104 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 HMX1Q9NP08 348 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 TMPRSS4Q9NRS4 437 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 GNPTGQ9UJJ9 305 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 GLI3P10071 1580 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 MYH11P35749 1972 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 KLF11O14901 512 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 ATP6V1B2P21281 511 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 EDNRBP24530 442 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 HCAR3P49019 387 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 TRMT10BQ6PF06 316 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 FAM126BQ8IXS8 530 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 SPATA6LQ8N4H0 392 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 GSTCDQ8NEC7 633 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 UGT2B28Q9BY64 529 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 GDAP2Q9NXN4 497 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 PADI3Q9ULW8 664 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 NENFQ9UMX5 172 aa10.85□□□□□ -0.67
LIMCH1-205ENST00000503057 DEAF1O75398 565 aaPredicted RBP10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 MAPK8P45983 427 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 NUP107P57740 925 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 PPIDQ08752 370 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 BNIP2Q12982 314 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 GRM3Q14832 879 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 CLEC20AQ6ZU45 233 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 KIAA0408Q6ZU52 694 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 CLYBLQ8N0X4 340 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 RNF217Q8TC41 542 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 LZICQ8WZA0 190 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 NMD3Q96D46 503 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 AGO3Q9H9G7 860 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 TXNRD2Q9NNW7 524 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 SCHIP1Q9P0W5 487 aaPredicted RBP10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 CDH22Q9UJ99 828 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 MYH10P35580 1976 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 IL27RAQ6UWB1 636 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 CUZD1Q86UP6 607 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 PLD3Q8IV08 490 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 MFSD3Q96ES6 412 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 MTIF3Q9H2K0 278 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 SMPD4Q9NXE4 827 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms