RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 LDB1Q86U70 411 aaPredicted RBP11.31□□□□□ -0.6
CHMP3-209ENST00000494623 ATAD1Q8NBU5 361 aa11.31□□□□□ -0.6
CHMP3-209ENST00000494623 PSMG2Q969U7 264 aa11.31□□□□□ -0.6
CHMP3-209ENST00000494623 PPP1R2P1Q96PQ5 205 aa11.31□□□□□ -0.6
CHMP3-209ENST00000494623 PPP1R12CQ9BZL4 782 aa11.31□□□□□ -0.6
CHMP3-209ENST00000494623 ZYG11BQ9C0D3 744 aa11.31□□□□□ -0.6
CHMP3-209ENST00000494623 ZCWPW1Q9H0M4 648 aa11.31□□□□□ -0.6
CHMP3-209ENST00000494623 MRPL46Q9H2W6 279 aaKnown RBP11.31□□□□□ -0.6
CHMP3-209ENST00000494623 MRM3Q9HC36 420 aaKnown RBP11.31□□□□□ -0.6
CHMP3-209ENST00000494623 CYP4F12Q9HCS2 524 aa11.31□□□□□ -0.6
CHMP3-209ENST00000494623 DLGAP2Q9P1A6 1054 aa11.31□□□□□ -0.6
CHMP3-209ENST00000494623 DNAJB4Q9UDY4 337 aa11.31□□□□□ -0.6
CHMP3-209ENST00000494623 SCML2Q9UQR0 700 aa11.31□□□□□ -0.6
CHMP3-209ENST00000494623 CDYLQ9Y232 598 aa11.31□□□□□ -0.6
CHMP3-209ENST00000494623 HNRNPLP14866 589 aaKnown RBP eCLIP11.31□□□□□ -0.6
CHMP3-209ENST00000494623 ELNP15502 786 aa11.31□□□□□ -0.6
CHMP3-209ENST00000494623 POLD2P49005 469 aa11.31□□□□□ -0.6
CHMP3-209ENST00000494623 SERPINH1P50454 418 aaKnown RBP11.31□□□□□ -0.6
CHMP3-209ENST00000494623 HNRNPDQ14103 355 aaKnown RBP11.31□□□□□ -0.6
CHMP3-209ENST00000494623 RNF111Q6ZNA4 994 aa11.31□□□□□ -0.6
CHMP3-209ENST00000494623 LCA5Q86VQ0 697 aa11.31□□□□□ -0.6
CHMP3-209ENST00000494623 CCDC117Q8IWD4 279 aaPredicted RBP11.31□□□□□ -0.6
CHMP3-209ENST00000494623 TTC9BQ8N6N2 239 aa11.31□□□□□ -0.6
CHMP3-209ENST00000494623 KLHDC9Q8NEP7 349 aa11.31□□□□□ -0.6
CHMP3-209ENST00000494623 OR6P1Q8NGX9 317 aa11.31□□□□□ -0.6
CHMP3-209ENST00000494623 SLC39A13Q96H72 371 aa11.31□□□□□ -0.6
CHMP3-209ENST00000494623 PRKD2Q9BZL6 878 aa11.31□□□□□ -0.6
CHMP3-209ENST00000494623 SP110Q9HB58 689 aa11.31□□□□□ -0.6
CHMP3-209ENST00000494623 A0A087X1B8 175 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 HEATR9A2RTY3 570 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 CFLARO15519 480 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 OAZ2O95190 189 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 LINGO3P0C6S8 592 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 POU4F1Q01851 419 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 BTKQ06187 659 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 CYLC2Q14093 348 aaPredicted RBP11.3□□□□□ -0.6
CHMP3-209ENST00000494623 IHHQ14623 411 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 TRIM71Q2Q1W2 868 aaKnown RBP11.3□□□□□ -0.6
CHMP3-209ENST00000494623 CLLU1OSQ5K130 101 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 SH2D4BQ5SQS7 431 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 LPCAT4Q643R3 524 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 RAP1GAP2Q684P5 730 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 TRIM67Q6ZTA4 783 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 LRRC49Q8IUZ0 686 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 UMODL1-AS1Q8N2C9 162 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 TXNDC5Q8NBS9 432 aaKnown RBP11.3□□□□□ -0.6
CHMP3-209ENST00000494623 IGSF8Q969P0 613 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 IMP4Q96G21 291 aaKnown RBP11.3□□□□□ -0.6
CHMP3-209ENST00000494623 B3GALT6Q96L58 329 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 FAM193BQ96PV7 902 aaPredicted RBP11.3□□□□□ -0.6
CHMP3-209ENST00000494623 OLFM1Q99784 485 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 ECSITQ9BQ95 431 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 MRPL57Q9BQC6 102 aaKnown RBP11.3□□□□□ -0.6
CHMP3-209ENST00000494623 FBXO44Q9H4M3 255 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 POMKQ9H5K3 350 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 RGS18Q9NS28 235 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 GTSE1Q9NYZ3 720 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 VTI1BQ9UEU0 232 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 SLC27A5Q9Y2P5 690 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 WASH4PA8MWX3 477 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 SLCO1B7G3V0H7 640 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 SLC10A3P09131 477 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 SLC2A3P11169 496 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 PRKAR2AP13861 404 aaKnown RBP11.3□□□□□ -0.6
CHMP3-209ENST00000494623 RHOQP17081 205 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 DSG1Q02413 1049 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 CCSAPQ6IQ19 270 aaPredicted RBP11.3□□□□□ -0.6
CHMP3-209ENST00000494623 RPS27LQ71UM5 84 aaKnown RBP11.3□□□□□ -0.6
CHMP3-209ENST00000494623 CIR1Q86X95 450 aaPredicted RBP11.3□□□□□ -0.6
CHMP3-209ENST00000494623 IGSF5Q9NSI5 407 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 NCKIPSDQ9NZQ3 722 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 ADAMTS6Q9UKP5 1117 aa11.3□□□□□ -0.6
CHMP3-209ENST00000494623 BUD23O43709 281 aaKnown RBP11.29□□□□□ -0.6
CHMP3-209ENST00000494623 UBTFL6P0CB48 400 aaPredicted RBP11.29□□□□□ -0.6
CHMP3-209ENST00000494623 CCDC166P0CW27 439 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 DNAJB1P25685 340 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 MSX2P35548 267 aaPredicted RBP11.29□□□□□ -0.6
CHMP3-209ENST00000494623 NDST2P52849 883 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 PLK1P53350 603 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 MTTPP55157 894 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 NRG1Q02297 640 aaPredicted RBP11.29□□□□□ -0.6
CHMP3-209ENST00000494623 NFE2Q16621 373 aaPredicted RBP11.29□□□□□ -0.6
CHMP3-209ENST00000494623 FAM83EQ2M2I3 478 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 CTXN3Q4LDR2 81 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 VARS2Q5ST30 1063 aaKnown RBP11.29□□□□□ -0.6
CHMP3-209ENST00000494623 FBXL22Q6P050 247 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 SLC24A5Q71RS6 500 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 DHDDSQ86SQ9 333 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 COLGALT2Q8IYK4 626 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 DSELQ8IZU8 1212 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 KDM1BQ8NB78 822 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 KYQ8NBH2 561 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 RP9Q8TA86 221 aaKnown RBP11.29□□□□□ -0.6
CHMP3-209ENST00000494623 RCN3Q96D15 328 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 CDRT15Q96T59 188 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 SUDS3Q9H7L9 328 aaPredicted RBP11.29□□□□□ -0.6
CHMP3-209ENST00000494623 PRDM5Q9NQX1 630 aaPredicted RBP11.29□□□□□ -0.6
CHMP3-209ENST00000494623 DONSONQ9NYP3 566 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 KCTD3Q9Y597 815 aa11.29□□□□□ -0.6
CHMP3-209ENST00000494623 PCDHB5Q9Y5E4 795 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms