RNA–Protein interactions for RNA: ENST00000491581.5

HDAC3-211, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 777 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-211ENST00000491581 CCDC114Q96M63 670 aa9.02□□□□□ -0.97
HDAC3-211ENST00000491581 PPP1R9BQ96SB3 815 aa9.02□□□□□ -0.97
HDAC3-211ENST00000491581 C1QTNF2Q9BXJ5 285 aa9.02□□□□□ -0.97
HDAC3-211ENST00000491581 TTYH3Q9C0H2 523 aa9.02□□□□□ -0.97
HDAC3-211ENST00000491581 MAGEH1Q9H213 219 aa9.02□□□□□ -0.97
HDAC3-211ENST00000491581 DHX35Q9H5Z1 703 aaKnown RBP9.02□□□□□ -0.97
HDAC3-211ENST00000491581 HAUS4Q9H6D7 363 aa9.02□□□□□ -0.97
HDAC3-211ENST00000491581 LRRC19Q9H756 370 aa9.02□□□□□ -0.97
HDAC3-211ENST00000491581 ETNK2Q9NVF9 386 aa9.02□□□□□ -0.97
HDAC3-211ENST00000491581 RABGEF1Q9UJ41 708 aa9.02□□□□□ -0.97
HDAC3-211ENST00000491581 AP4E1Q9UPM8 1137 aa9.02□□□□□ -0.97
HDAC3-211ENST00000491581 PAXBP1Q9Y5B6 917 aa9.02□□□□□ -0.97
HDAC3-211ENST00000491581 SPTY2D1-AS1A0A0U1RR47 76 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 LRRC10BA6NIK2 292 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 OPA1O60313 960 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 GSRP00390 522 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 MT-CO3P00414 261 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 CSF2P04141 144 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 CALB1P05937 261 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 JUNDP17535 347 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 GM2AP17900 193 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 TNFAIP3P21580 790 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 PSMA2P25787 234 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 IL1R2P27930 398 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 PAPOLAP51003 745 aaKnown RBP9.01□□□□□ -0.97
HDAC3-211ENST00000491581 ADKP55263 362 aaKnown RBP9.01□□□□□ -0.97
HDAC3-211ENST00000491581 GSCP56915 257 aaPredicted RBP9.01□□□□□ -0.97
HDAC3-211ENST00000491581 TPI1P60174 286 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 PFN3P60673 137 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 MMRN1Q13201 1228 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 SMTNL2Q2TAL5 461 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 INAVAQ3KP66 663 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 PPP6R3Q5H9R7 873 aaPredicted RBP9.01□□□□□ -0.97
HDAC3-211ENST00000491581 CT47A1Q5JQC4 288 aaPredicted RBP9.01□□□□□ -0.97
HDAC3-211ENST00000491581 EFHC2Q5JST6 749 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 CCDC183Q5T5S1 534 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 NEK5Q6P3R8 708 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 KYAT3Q6YP21 454 aaKnown RBP9.01□□□□□ -0.97
HDAC3-211ENST00000491581 RD3Q7Z3Z2 195 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 IFI44Q8TCB0 444 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 PTCD2Q8WV60 388 aaKnown RBP9.01□□□□□ -0.97
HDAC3-211ENST00000491581 PPP1R16AQ96I34 528 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 FEM1CQ96JP0 617 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 EPAS1Q99814 870 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 CNPY3Q9BT09 278 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 LRRC61Q9BV99 259 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 SUDS3Q9H7L9 328 aaPredicted RBP9.01□□□□□ -0.97
HDAC3-211ENST00000491581 MRPL40Q9NQ50 206 aaKnown RBP9.01□□□□□ -0.97
HDAC3-211ENST00000491581 RTN4Q9NQC3 1192 aaKnown RBP9.01□□□□□ -0.97
HDAC3-211ENST00000491581 SIRPGQ9P1W8 387 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 CLCA2Q9UQC9 943 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 OR1A2Q9Y585 309 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 PCDHGA1Q9Y5H4 931 aa9.01□□□□□ -0.97
HDAC3-211ENST00000491581 DFFAO00273 331 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 FPGTO14772 594 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 AP1G1O43747 822 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 CSO75390 466 aaKnown RBP9□□□□□ -0.97
HDAC3-211ENST00000491581 MAP3K6O95382 1288 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 POP4O95707 220 aaKnown RBP9□□□□□ -0.97
HDAC3-211ENST00000491581 PCCBP05166 539 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 TPM2P07951 284 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 CKMT1AP12532 417 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 NME1P15531 152 aaKnown RBP9□□□□□ -0.97
HDAC3-211ENST00000491581 FERP16591 822 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 ERCC2P18074 760 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 MIPP30301 263 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 EIF4A3P38919 411 aaKnown RBP9□□□□□ -0.97
HDAC3-211ENST00000491581 SNRPD1P62314 119 aaKnown RBP9□□□□□ -0.97
HDAC3-211ENST00000491581 SLC20A2Q08357 652 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 RALGDSQ12967 914 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 SGCGQ13326 291 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 MTA1Q13330 715 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 ASIC2Q16515 512 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 WSCD2Q2TBF2 565 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 PRRT3Q5FWE3 981 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 KIAA1161Q6NSJ0 714 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 DCUN1D2Q6PH85 259 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 FOXR1Q6PIV2 292 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 RFLNAQ6ZTI6 216 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 EFL1Q7Z2Z2 1120 aaKnown RBP9□□□□□ -0.97
HDAC3-211ENST00000491581 LUZP1Q86V48 1076 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 SLC35F3Q8IY50 421 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 PGBD5Q8N414 524 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 OXR1Q8N573 874 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9□□□□□ -0.97
HDAC3-211ENST00000491581 DCBLD1Q8N8Z6 715 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 CCL4L1Q8NHW4 92 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 ISG20Q96AZ6 181 aaKnown RBP9□□□□□ -0.97
HDAC3-211ENST00000491581 GDAP1L1Q96MZ0 367 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 GBP4Q96PP9 640 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 FUCA2Q9BTY2 467 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 SYNDIG1Q9H7V2 258 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 PCDH12Q9NPG4 1184 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 CWC15Q9P013 229 aaKnown RBP9□□□□□ -0.97
HDAC3-211ENST00000491581 CNOT8Q9UFF9 292 aaKnown RBP9□□□□□ -0.97
HDAC3-211ENST00000491581 IPO11Q9UI26 975 aaKnown RBP9□□□□□ -0.97
HDAC3-211ENST00000491581 HPCAL4Q9UM19 191 aa9□□□□□ -0.97
HDAC3-211ENST00000491581 RP1P56715 2156 aa8.99□□□□□ -0.97
HDAC3-211ENST00000491581 ASXL3Q9C0F0 2248 aa8.99□□□□□ -0.97
HDAC3-211ENST00000491581 A0A087WV48 116 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms