RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 PTPN3P26045 913 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 SLC8A1P32418 973 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 TNNT3P45378 269 aaPredicted RBP10.42□□□□□ -0.74
SKA1-204ENST00000488454 NRLP54845 237 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 MAXP61244 160 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 AP1S1P61966 158 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 CSTF1Q05048 431 aaKnown RBP10.42□□□□□ -0.74
SKA1-204ENST00000488454 ZBTB16Q05516 673 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 CKAP4Q07065 602 aaKnown RBP10.42□□□□□ -0.74
SKA1-204ENST00000488454 BCL2L1Q07817 233 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 WASHC5Q12768 1159 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 ZBTB17Q13105 803 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 PRPSAP1Q14558 356 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 SIX1Q15475 284 aaPredicted RBP10.42□□□□□ -0.74
SKA1-204ENST00000488454 ITPRIPL1Q6GPH6 555 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 GDPD4Q6W3E5 623 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 PGBD5Q8N414 524 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.42□□□□□ -0.74
SKA1-204ENST00000488454 PRELID2Q8N945 189 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 CHST14Q8NCH0 376 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 OR6K2Q8NGY2 324 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 LRRC45Q96CN5 670 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 PPP1R16AQ96I34 528 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 MRGPRX1Q96LB2 322 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 TEKT5Q96M29 485 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 TUBGCP5Q96RT8 1024 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 OMDQ99983 421 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 SEMA3CQ99985 751 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 OSBPL1AQ9BXW6 950 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 CEP41Q9BYV8 373 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 CPEB1Q9BZB8 566 aaKnown RBP10.42□□□□□ -0.74
SKA1-204ENST00000488454 RSPH9Q9H1X1 276 aaPredicted RBP10.42□□□□□ -0.74
SKA1-204ENST00000488454 ATP13A3Q9H7F0 1226 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 USP29Q9HBJ7 922 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 SMARCAL1Q9NZC9 954 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 RSPH14Q9UHP6 348 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 PPM1HQ9ULR3 514 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 ATP8A1Q9Y2Q0 1164 aa10.42□□□□□ -0.74
SKA1-204ENST00000488454 A0A1W2PQ67 120 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 CCDC188H7C350 402 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 KPNA3O00505 521 aaPredicted RBP10.41□□□□□ -0.74
SKA1-204ENST00000488454 MUSKO15146 869 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 FANCGO15287 622 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 OPHN1O60890 802 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 PHF2O75151 1096 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 ZNF217O75362 1048 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 LEFTY1O75610 366 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 HLA-DQB2P05538 268 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 SERPINF2P08697 491 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 GABRG2P18507 467 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 SERPINA4P29622 427 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 HOXA6P31267 233 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 COILP38432 576 aaPredicted RBP10.41□□□□□ -0.74
SKA1-204ENST00000488454 KCNJ1P48048 391 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 PSMD8P48556 350 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 COPAP53621 1224 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 RPS14P62263 151 aaKnown RBP10.41□□□□□ -0.74
SKA1-204ENST00000488454 OASLQ15646 514 aaKnown RBP10.41□□□□□ -0.74
SKA1-204ENST00000488454 CST6Q15828 149 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 TTC31Q49AM3 519 aaPredicted RBP10.41□□□□□ -0.74
SKA1-204ENST00000488454 C4orf48Q5BLP8 95 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 ANKRD20A2Q5SQ80 823 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 ANKRD20A1Q5TYW2 823 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 ANKRD20A3Q5VUR7 823 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 NCEH1Q6PIU2 408 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 CCDC137Q6PK04 289 aaKnown RBP10.41□□□□□ -0.74
SKA1-204ENST00000488454 C4orf22Q6V702 233 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 ARHGEF18Q6ZSZ5 1173 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 BPHLQ86WA6 291 aaPredicted RBP10.41□□□□□ -0.74
SKA1-204ENST00000488454 ZNF567Q8N184 647 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 CNTD1Q8N815 330 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 PIP4K2CQ8TBX8 421 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 GRIN3AQ8TCU5 1115 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 GRK7Q8WTQ7 553 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 ZNF641Q96N77 438 aaPredicted RBP10.41□□□□□ -0.74
SKA1-204ENST00000488454 SPATA13Q96N96 652 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 RUNDC3BQ96NL0 473 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 PPP1R2P1Q96PQ5 205 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 MKRN2Q9H000 416 aaKnown RBP10.41□□□□□ -0.74
SKA1-204ENST00000488454 SLC25A51Q9H1U9 297 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 NOD2Q9HC29 1040 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 GLOD4Q9HC38 313 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 C11orf16Q9NQ32 467 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 C2orf42Q9NWW7 574 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 EBF1Q9UH73 591 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 CDC23Q9UJX2 597 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 FBXO4Q9UKT5 387 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 KIAA1549LQ6ZVL6 1849 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 BDP1A6H8Y1 2624 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 NUP205Q92621 2012 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 MIA3Q5JRA6 1907 aa10.41□□□□□ -0.74
SKA1-204ENST00000488454 GOLGA6CA6NDK9 693 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 GOLGA6BA6NDN3 693 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 K7ESF4 209 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 AXIN1O15169 862 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 MID1O15344 667 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 ZNF500O60304 480 aaPredicted RBP10.4□□□□□ -0.74
SKA1-204ENST00000488454 GCATO75600 419 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 ANXA9O76027 345 aa10.4□□□□□ -0.74
SKA1-204ENST00000488454 UGT2B4P06133 528 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms