RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 UXTQ9UBK9 157 aaPredicted RBP16.57■□□□□ 0.24
COL7A1-210ENST00000487017 TCRBV7S2A1N4TA0A589 114 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 B4GALT5O43286 388 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 SERPINA4P29622 427 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 IFNGR2P38484 337 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 SPATA6LQ8N4H0 392 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 PLGRKTQ9HBL7 147 aa16.57■□□□□ 0.24
COL7A1-210ENST00000487017 DHRS12A0PJE2 317 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 TSPAN8P19075 237 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 ZNF438Q7Z4V0 828 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 CMC1Q7Z7K0 106 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 AMIGO2Q86SJ2 522 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 PDE9AO76083 593 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 MFN2O95140 757 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 CAPN1P07384 714 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 SNHG28P0DPA3 235 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 ACOX1Q15067 660 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 PTPN20Q4JDL3 420 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 C11orf88Q6PI97 169 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 TXNDC11Q6PKC3 985 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 USP45Q70EL2 814 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 MON1BQ7L1V2 547 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 TRIM63Q969Q1 353 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 P2RY11Q96G91 374 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 UROC1Q96N76 676 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 PLEKHG4BQ96PX9 1271 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 NUAK2Q9H093 628 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 FBXO5Q9UKT4 447 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 FZD1Q9UP38 647 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 TDRKHQ9Y2W6 561 aaKnown RBP16.56■□□□□ 0.24
COL7A1-210ENST00000487017 DYRK3O43781 588 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 TGDSO95455 350 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 INTS11Q5TA45 600 aaKnown RBP16.56■□□□□ 0.24
COL7A1-210ENST00000487017 GPRIN3Q6ZVF9 776 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 OLFM1Q99784 485 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 MRPL9Q9BYD2 267 aaKnown RBP16.56■□□□□ 0.24
COL7A1-210ENST00000487017 NFKBIZQ9BYH8 718 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 PDGFDQ9GZP0 370 aaPredicted RBP16.56■□□□□ 0.24
COL7A1-210ENST00000487017 ATP6V1HQ9UI12 483 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 PCDHAC2Q9Y5I4 1007 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 AK5Q9Y6K8 562 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 AGPSO00116 658 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 AZIN1O14977 448 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 TPSB2P20231 275 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 ATP5C1P36542 298 aaKnown RBP16.56■□□□□ 0.24
COL7A1-210ENST00000487017 AIF1P55008 147 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 POLR2LP62875 67 aaKnown RBP16.56■□□□□ 0.24
COL7A1-210ENST00000487017 TPSAB1Q15661 275 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 PAGE2BQ5JRK9 111 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 TATDN1Q6P1N9 297 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 SPESP1Q6UW49 350 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 C12orf50Q8NA57 414 aaPredicted RBP16.56■□□□□ 0.24
COL7A1-210ENST00000487017 MLPHQ9BV36 600 aaPredicted RBP16.56■□□□□ 0.24
COL7A1-210ENST00000487017 NMUR2Q9GZQ4 415 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 EPB41L4BQ9H329 900 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 CLK4Q9HAZ1 481 aaKnown RBP16.56■□□□□ 0.24
COL7A1-210ENST00000487017 S100A14Q9HCY8 104 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 MAPRE3Q9UPY8 281 aa16.56■□□□□ 0.24
COL7A1-210ENST00000487017 CNPP09543 421 aaKnown RBP16.55■□□□□ 0.24
COL7A1-210ENST00000487017 NOS3P29474 1203 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 ZNF544Q6NX49 715 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 CLYBLQ8N0X4 340 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 HELQQ8TDG4 1101 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 ERLEC1Q96DZ1 483 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 BBS4Q96RK4 519 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 GMPPBQ9Y5P6 360 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 SH3BGRLO75368 114 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 IL12RB1P42701 662 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 CDC42P60953 191 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 IRF8Q02556 426 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 EEF1DP3Q658K8 133 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 PQLC1Q8N2U9 271 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 ZNF483Q8TF39 744 aaPredicted RBP16.55■□□□□ 0.24
COL7A1-210ENST00000487017 FAM84AQ96KN4 292 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 ADAM2Q99965 735 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 CAB39LQ9H9S4 337 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 DIABLOQ9NR28 239 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 A8MX80 341 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 SLC28A1O00337 649 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 IDO1P14902 403 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 CRATP43155 626 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 PPIL2Q13356 520 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 VGLL4Q14135 290 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 INSCQ1MX18 579 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 FNBP1LQ5T0N5 605 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 POTEHQ6S545 545 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 LRRC52Q8N7C0 313 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 MYLPFQ96A32 169 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 C7orf26Q96N11 449 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 ASB8Q9H765 288 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 PRKAG3Q9UGI9 489 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 SPATA2Q9UM82 520 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 ADM5C9JUS6 153 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 GRM5P41594 1212 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 PTP4A2Q12974 167 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 EIF2B5Q13144 721 aaKnown RBP16.55■□□□□ 0.24
COL7A1-210ENST00000487017 NR1D2Q14995 579 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 CYP2A13Q16696 494 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 GCNT7Q6ZNI0 430 aa16.55■□□□□ 0.24
COL7A1-210ENST00000487017 XYLT1Q86Y38 959 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms