RNA–Protein interactions for RNA: ENST00000486404.5

CHMP3-208, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 650 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-208ENST00000486404 CYTH1Q15438 398 aa13.04□□□□□ -0.32
CHMP3-208ENST00000486404 TMCO4Q5TGY1 634 aa13.04□□□□□ -0.32
CHMP3-208ENST00000486404 AFMIDQ63HM1 303 aa13.04□□□□□ -0.32
CHMP3-208ENST00000486404 ERAP2Q6P179 960 aa13.04□□□□□ -0.32
CHMP3-208ENST00000486404 KYAT3Q6YP21 454 aaKnown RBP13.04□□□□□ -0.32
CHMP3-208ENST00000486404 GCNT7Q6ZNI0 430 aa13.04□□□□□ -0.32
CHMP3-208ENST00000486404 POLNQ7Z5Q5 900 aa13.04□□□□□ -0.32
CHMP3-208ENST00000486404 GLRX5Q86SX6 157 aa13.04□□□□□ -0.32
CHMP3-208ENST00000486404 ARHGAP12Q8IWW6 846 aa13.04□□□□□ -0.32
CHMP3-208ENST00000486404 BBS5Q8N3I7 341 aa13.04□□□□□ -0.32
CHMP3-208ENST00000486404 BAHD1Q8TBE0 780 aaPredicted RBP13.04□□□□□ -0.32
CHMP3-208ENST00000486404 FAM174AQ8TBP5 190 aa13.04□□□□□ -0.32
CHMP3-208ENST00000486404 NSMCE1Q8WV22 266 aa13.04□□□□□ -0.32
CHMP3-208ENST00000486404 CCDC42Q96M95 316 aa13.04□□□□□ -0.32
CHMP3-208ENST00000486404 CSPG4P5Q96PW8 444 aa13.04□□□□□ -0.32
CHMP3-208ENST00000486404 TUBGCP5Q96RT8 1024 aa13.04□□□□□ -0.32
CHMP3-208ENST00000486404 PACSIN1Q9BY11 444 aa13.04□□□□□ -0.32
CHMP3-208ENST00000486404 TRIM5Q9C035 493 aa13.04□□□□□ -0.32
CHMP3-208ENST00000486404 PCDH18Q9HCL0 1135 aa13.04□□□□□ -0.32
CHMP3-208ENST00000486404 DKK3Q9UBP4 350 aa13.04□□□□□ -0.32
CHMP3-208ENST00000486404 SEPT3Q9UH03 358 aa13.04□□□□□ -0.32
CHMP3-208ENST00000486404 IPO11Q9UI26 975 aaKnown RBP13.04□□□□□ -0.32
CHMP3-208ENST00000486404 GGT7Q9UJ14 662 aa13.04□□□□□ -0.32
CHMP3-208ENST00000486404 NENFQ9UMX5 172 aa13.04□□□□□ -0.32
CHMP3-208ENST00000486404 MFHAS1Q9Y4C4 1052 aa13.04□□□□□ -0.32
CHMP3-208ENST00000486404 IGLON5A6NGN9 336 aa13.03□□□□□ -0.32
CHMP3-208ENST00000486404 FPGTO14772 594 aa13.03□□□□□ -0.32
CHMP3-208ENST00000486404 INSIG1O15503 277 aa13.03□□□□□ -0.32
CHMP3-208ENST00000486404 TNFSF14O43557 240 aa13.03□□□□□ -0.32
CHMP3-208ENST00000486404 SDC3O75056 442 aa13.03□□□□□ -0.32
CHMP3-208ENST00000486404 TMEM253P0C7T8 217 aa13.03□□□□□ -0.32
CHMP3-208ENST00000486404 AMPD1P23109 780 aa13.03□□□□□ -0.32
CHMP3-208ENST00000486404 RENBPP51606 427 aa13.03□□□□□ -0.32
CHMP3-208ENST00000486404 SUOXP51687 545 aa13.03□□□□□ -0.32
CHMP3-208ENST00000486404 ADKP55263 362 aaKnown RBP13.03□□□□□ -0.32
CHMP3-208ENST00000486404 HS1BP3Q53T59 392 aa13.03□□□□□ -0.32
CHMP3-208ENST00000486404 BRAT1Q6PJG6 821 aa13.03□□□□□ -0.32
CHMP3-208ENST00000486404 ARHGAP36Q6ZRI8 547 aa13.03□□□□□ -0.32
CHMP3-208ENST00000486404 SPATS2Q86XZ4 545 aaKnown RBP13.03□□□□□ -0.32
CHMP3-208ENST00000486404 PNPLA1Q8N8W4 532 aa13.03□□□□□ -0.32
CHMP3-208ENST00000486404 DENND6BQ8NEG7 585 aa13.03□□□□□ -0.32
CHMP3-208ENST00000486404 OR13H1Q8NG92 308 aa13.03□□□□□ -0.32
CHMP3-208ENST00000486404 SAP25Q8TEE9 199 aa13.03□□□□□ -0.32
CHMP3-208ENST00000486404 ZNF599Q96NL3 588 aa13.03□□□□□ -0.32
CHMP3-208ENST00000486404 WRAP53Q9BUR4 548 aaKnown RBP13.03□□□□□ -0.32
CHMP3-208ENST00000486404 CPEB1Q9BZB8 566 aaKnown RBP13.03□□□□□ -0.32
CHMP3-208ENST00000486404 KLHL11Q9NVR0 708 aa13.03□□□□□ -0.32
CHMP3-208ENST00000486404 RCOR3Q9P2K3 495 aaPredicted RBP13.03□□□□□ -0.32
CHMP3-208ENST00000486404 KLK13Q9UKR3 277 aa13.03□□□□□ -0.32
CHMP3-208ENST00000486404 NEUROG3Q9Y4Z2 214 aa13.03□□□□□ -0.32
CHMP3-208ENST00000486404 AKR1B15C9JRZ8 316 aaPredicted RBP13.02□□□□□ -0.33
CHMP3-208ENST00000486404 H3BM21 787 aa13.02□□□□□ -0.33
CHMP3-208ENST00000486404 PROSCO94903 275 aa13.02□□□□□ -0.33
CHMP3-208ENST00000486404 TOP3BO95985 862 aaKnown RBP13.02□□□□□ -0.33
CHMP3-208ENST00000486404 PAK4O96013 591 aaPredicted RBP13.02□□□□□ -0.33
CHMP3-208ENST00000486404 KRT7P08729 469 aa13.02□□□□□ -0.33
CHMP3-208ENST00000486404 RABIFP47224 123 aa13.02□□□□□ -0.33
CHMP3-208ENST00000486404 AP1S1P61966 158 aa13.02□□□□□ -0.33
CHMP3-208ENST00000486404 BCL2L1Q07817 233 aa13.02□□□□□ -0.33
CHMP3-208ENST00000486404 LBRQ14739 615 aaKnown RBP13.02□□□□□ -0.33
CHMP3-208ENST00000486404 TXNRD3NBQ6F5E7 133 aa13.02□□□□□ -0.33
CHMP3-208ENST00000486404 UNQ6494/PRO21346Q6UXR6 183 aa13.02□□□□□ -0.33
CHMP3-208ENST00000486404 DBX2Q6ZNG2 339 aa13.02□□□□□ -0.33
CHMP3-208ENST00000486404 Q6ZSR6 202 aa13.02□□□□□ -0.33
CHMP3-208ENST00000486404 RAB44Q7Z6P3 723 aaPredicted RBP13.02□□□□□ -0.33
CHMP3-208ENST00000486404 ABI3BPQ7Z7G0 1075 aa13.02□□□□□ -0.33
CHMP3-208ENST00000486404 SRLQ86TD4 932 aa13.02□□□□□ -0.33
CHMP3-208ENST00000486404 CHCHD4Q8N4Q1 142 aa13.02□□□□□ -0.33
CHMP3-208ENST00000486404 EID2Q8N6I1 236 aa13.02□□□□□ -0.33
CHMP3-208ENST00000486404 KCTD6Q8NC69 237 aa13.02□□□□□ -0.33
CHMP3-208ENST00000486404 TSEN2Q8NCE0 465 aaKnown RBP13.02□□□□□ -0.33
CHMP3-208ENST00000486404 CNDP2Q96KP4 475 aaKnown RBP13.02□□□□□ -0.33
CHMP3-208ENST00000486404 ZNF641Q96N77 438 aaPredicted RBP13.02□□□□□ -0.33
CHMP3-208ENST00000486404 SUV39H2Q9H5I1 410 aa13.02□□□□□ -0.33
CHMP3-208ENST00000486404 NHEJ1Q9H9Q4 299 aaPredicted RBP13.02□□□□□ -0.33
CHMP3-208ENST00000486404 SPTLC3Q9NUV7 552 aa13.02□□□□□ -0.33
CHMP3-208ENST00000486404 DNAJC28Q9NX36 388 aa13.02□□□□□ -0.33
CHMP3-208ENST00000486404 TSPAN11A1L157 253 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 ENC1O14682 589 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 AREL1O15033 823 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 SPINT1O43278 529 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 MMP20O60882 483 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 NEBLO76041 1014 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 TM7SF2O76062 418 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 LDOC1O95751 146 aaPredicted RBP13.01□□□□□ -0.33
CHMP3-208ENST00000486404 ATXN1LP0C7T5 689 aaKnown RBP13.01□□□□□ -0.33
CHMP3-208ENST00000486404 MAN1A1P33908 653 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 HSPA9P38646 679 aaKnown RBP13.01□□□□□ -0.33
CHMP3-208ENST00000486404 RGRP47804 291 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 RXRGP48443 463 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 CSNK1DP48730 415 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 SCNN1BP51168 640 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 THOP1P52888 689 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 PDE1CQ14123 709 aaPredicted RBP13.01□□□□□ -0.33
CHMP3-208ENST00000486404 FGL2Q14314 439 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 MESDQ14696 234 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 SHBQ15464 509 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 ST3GAL2Q16842 350 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 ODF2Q5BJF6 829 aa13.01□□□□□ -0.33
CHMP3-208ENST00000486404 SARM1Q6SZW1 724 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms