RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 KATNA1O75449 491 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 F2P00734 622 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 GABRR2P28476 465 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 NR6A1Q15406 480 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 CLVS1Q8IUQ0 354 aaPredicted RBP11.11□□□□□ -0.63
HDAC6-228ENST00000486227 KCTD4Q8WVF5 259 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 OMDQ99983 421 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 SDCBP2Q9H190 292 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 SPASTQ9UBP0 616 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 SYNDIG1LA6NDD5 238 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 PDZK1P1A8MUH7 402 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 CCNT2O60583 730 aaKnown RBP11.11□□□□□ -0.63
HDAC6-228ENST00000486227 OCM2P0CE71 109 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 OCMP0CE72 109 aaPredicted RBP11.11□□□□□ -0.63
HDAC6-228ENST00000486227 CCL5P13501 91 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 EDNRBP24530 442 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 INPP1P49441 399 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 SLC25A3Q00325 362 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 PLCL1Q15111 1095 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 C1orf220Q5T0J3 134 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 SERPINA13PQ6UXR4 307 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 RD3Q7Z3Z2 195 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 SPATA6LQ8N4H0 392 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 SLC44A1Q8WWI5 657 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 QKIQ96PU8 341 aaKnown RBP eCLIP11.11□□□□□ -0.63
HDAC6-228ENST00000486227 CADM1Q9BY67 442 aaKnown RBP11.11□□□□□ -0.63
HDAC6-228ENST00000486227 PLGRKTQ9HBL7 147 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 RAD54BQ9Y620 910 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 MYH1P12882 1939 aa11.11□□□□□ -0.63
HDAC6-228ENST00000486227 COL2A1P02458 1487 aaPredicted RBP11.11□□□□□ -0.63
HDAC6-228ENST00000486227 FKBP9O95302 570 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 FGF19O95750 216 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 ALBP02768 609 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 CYP2A6P11509 494 aaPredicted RBP11.1□□□□□ -0.63
HDAC6-228ENST00000486227 ME2P23368 584 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 PRKAA2P54646 552 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 NRLP54845 237 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 C21orf59P57076 290 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 OGDHQ02218 1023 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 CAMK2GQ13555 558 aaPredicted RBP11.1□□□□□ -0.63
HDAC6-228ENST00000486227 BOP1Q14137 746 aaKnown RBP11.1□□□□□ -0.63
HDAC6-228ENST00000486227 CACHD1Q5VU97 1274 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 GDF6Q6KF10 455 aaPredicted RBP11.1□□□□□ -0.63
HDAC6-228ENST00000486227 FKBP9P1Q75LS8 142 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 ZNF555Q8NEP9 628 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 ACMSDQ8TDX5 336 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 NAT14Q8WUY8 206 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 RSPH1Q8WYR4 309 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 DDX1Q92499 740 aaKnown RBP11.1□□□□□ -0.63
HDAC6-228ENST00000486227 HDAC10Q969S8 669 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 PPP1R16AQ96I34 528 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 ACE2Q9BYF1 805 aaPredicted RBP11.1□□□□□ -0.63
HDAC6-228ENST00000486227 C12orf65Q9H3J6 166 aaKnown RBP11.1□□□□□ -0.63
HDAC6-228ENST00000486227 GIMAP4Q9NUV9 329 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 RAB23Q9ULC3 237 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 DMTF1Q9Y222 760 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 AK5Q9Y6K8 562 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 A0A087WXM4 84 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 EVPLLA8MZ36 301 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 IFRD1O00458 451 aaPredicted RBP11.1□□□□□ -0.63
HDAC6-228ENST00000486227 TM7SF2O76062 418 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 BAIAP3O94812 1187 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 CREB1P16220 341 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 TPSB2P20231 275 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 SERPINA4P29622 427 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 CDK18Q07002 472 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 LRRC74AQ0VAA2 488 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 TPSAB1Q15661 275 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 SLC1A5Q15758 541 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 VARS2Q5ST30 1063 aaKnown RBP11.1□□□□□ -0.63
HDAC6-228ENST00000486227 TAPT1Q6NXT6 567 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 LRRC8BQ6P9F7 803 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 DRICH1Q6PGQ1 229 aaPredicted RBP11.1□□□□□ -0.63
HDAC6-228ENST00000486227 RRM2BQ7LG56 351 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 CLEC4FQ8N1N0 589 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 TMCO5AQ8N6Q1 288 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 RNF148Q8N7C7 305 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 SCAMP5Q8TAC9 235 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 SPOCK2Q92563 424 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 BTN2A3PQ96KV6 586 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 MLPHQ9BV36 600 aaPredicted RBP11.1□□□□□ -0.63
HDAC6-228ENST00000486227 CAB39LQ9H9S4 337 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 BPIFA1Q9NP55 256 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 TIMMDC1Q9NPL8 285 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 SNX15Q9NRS6 342 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 ZNF839A8K0R7 811 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 ARVCFO00192 962 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 SERPINA6P08185 405 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 CHRM1P11229 460 aaPredicted RBP11.1□□□□□ -0.63
HDAC6-228ENST00000486227 FPGSQ05932 587 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 AASDHQ4L235 1098 aaPredicted RBP11.1□□□□□ -0.63
HDAC6-228ENST00000486227 TMEM63BQ5T3F8 832 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 SYPL2Q5VXT5 272 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 FUT10Q6P4F1 479 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 POTEHQ6S545 545 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 ZNF554Q86TJ5 538 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 NIPA2Q8N8Q9 360 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 ITFG2Q969R8 447 aa11.1□□□□□ -0.63
HDAC6-228ENST00000486227 TSEN34Q9BSV6 310 aaKnown RBP11.1□□□□□ -0.63
HDAC6-228ENST00000486227 DCUN1D5Q9BTE7 237 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms