RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 PIP5K1CO60331 668 aa4.04□□□□□ -1.76
VPS41-213ENST00000485955 PEX14O75381 377 aa4.04□□□□□ -1.76
VPS41-213ENST00000485955 ZNF432O94892 652 aa4.04□□□□□ -1.76
VPS41-213ENST00000485955 AFPP02771 609 aaKnown RBP4.04□□□□□ -1.76
VPS41-213ENST00000485955 SRD5A1P18405 259 aa4.04□□□□□ -1.76
VPS41-213ENST00000485955 SSTR2P30874 369 aa4.04□□□□□ -1.76
VPS41-213ENST00000485955 RPL3P39023 403 aaKnown RBP4.04□□□□□ -1.76
VPS41-213ENST00000485955 KRTAP10-7P60409 375 aaPredicted RBP4.04□□□□□ -1.76
VPS41-213ENST00000485955 DDR1Q08345 913 aa4.04□□□□□ -1.76
VPS41-213ENST00000485955 ST3GAL1Q11201 340 aa4.04□□□□□ -1.76
VPS41-213ENST00000485955 DHX34Q14147 1143 aaKnown RBP4.04□□□□□ -1.76
VPS41-213ENST00000485955 FBXO47Q5MNV8 452 aa4.04□□□□□ -1.76
VPS41-213ENST00000485955 RHBDF2Q6PJF5 856 aa4.04□□□□□ -1.76
VPS41-213ENST00000485955 C17orf99Q6UX52 265 aa4.04□□□□□ -1.76
VPS41-213ENST00000485955 CCDC129Q6ZRS4 1044 aa4.04□□□□□ -1.76
VPS41-213ENST00000485955 LURAP1LQ8IV03 231 aa4.04□□□□□ -1.76
VPS41-213ENST00000485955 CPXM2Q8N436 756 aa4.04□□□□□ -1.76
VPS41-213ENST00000485955 CNOT9Q92600 299 aaKnown RBP4.04□□□□□ -1.76
VPS41-213ENST00000485955 SCMH1Q96GD3 660 aa4.04□□□□□ -1.76
VPS41-213ENST00000485955 TWNKQ96RR1 684 aa4.04□□□□□ -1.76
VPS41-213ENST00000485955 MROH8Q9H579 483 aa4.04□□□□□ -1.76
VPS41-213ENST00000485955 OR6C3Q9NZP0 311 aa4.04□□□□□ -1.76
VPS41-213ENST00000485955 NDRG3Q9UGV2 375 aa4.04□□□□□ -1.76
VPS41-213ENST00000485955 IGLV5-37A0A075B6J1 123 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 LOC102724159A0A0B4J2E5 919 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 C17orf113A0A1B0GUU1 675 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 DENND3A2RUS2 1198 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 PABPN1LA6NDY0 278 aaKnown RBP4.03□□□□□ -1.76
VPS41-213ENST00000485955 CBY3A6NI87 242 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 NPIPB11E5RHQ5 1161 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 EBAG9O00559 213 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 SLC16A5O15375 505 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 CEP104O60308 925 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 ATP2C2O75185 946 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 RGS11O94810 467 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 CH25HO95992 272 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 FMO4P31512 558 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 PIGAP37287 484 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 RGS19P49795 217 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 ILF3Q12906 894 aaKnown RBP eCLIP4.03□□□□□ -1.76
VPS41-213ENST00000485955 DLG1Q12959 904 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 NAA25Q14CX7 972 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 PWP2Q15269 919 aaKnown RBP4.03□□□□□ -1.76
VPS41-213ENST00000485955 ANKRD1Q15327 319 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 ZNF718Q3SXZ3 478 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 DCAF6Q58WW2 860 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 ZNF628Q5EBL2 1059 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 XKR9Q5GH70 373 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 EFHC1Q5JVL4 640 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 C9orf50Q5SZB4 431 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 FAM69BQ5VUD6 431 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 CCDC105Q8IYK2 499 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 SPATA5Q8NB90 893 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 RFWD2Q8NHY2 731 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 SH3KBP1Q96B97 665 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 IGSF21Q96ID5 467 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 DUX5Q96PT3 197 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 PKP4Q99569 1192 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 REEP2Q9BRK0 252 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 PHF7Q9BWX1 381 aaPredicted RBP4.03□□□□□ -1.76
VPS41-213ENST00000485955 TAOK3Q9H2K8 898 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 EPHX3Q9H6B9 360 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 RETREG1Q9H6L5 497 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 IFT80Q9P2H3 777 aaPredicted RBP4.03□□□□□ -1.76
VPS41-213ENST00000485955 KCNG2Q9UJ96 466 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 PCDHGB5Q9Y5G0 923 aa4.03□□□□□ -1.76
VPS41-213ENST00000485955 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.02□□□□□ -1.77
VPS41-213ENST00000485955 KLRF2D3W0D1 207 aa4.02□□□□□ -1.77
VPS41-213ENST00000485955 LDB3O75112 727 aa4.02□□□□□ -1.77
VPS41-213ENST00000485955 CAMTA2O94983 1202 aa4.02□□□□□ -1.77
VPS41-213ENST00000485955 SNRNP70P08621 437 aaKnown RBP4.02□□□□□ -1.77
VPS41-213ENST00000485955 TFPIP10646 304 aa4.02□□□□□ -1.77
VPS41-213ENST00000485955 PAPOLAP51003 745 aaKnown RBP4.02□□□□□ -1.77
VPS41-213ENST00000485955 SLC12A1Q13621 1099 aa4.02□□□□□ -1.77
VPS41-213ENST00000485955 EFR3AQ14156 821 aa4.02□□□□□ -1.77
VPS41-213ENST00000485955 SOWAHAQ2M3V2 549 aa4.02□□□□□ -1.77
VPS41-213ENST00000485955 EDRF1Q3B7T1 1238 aa4.02□□□□□ -1.77
VPS41-213ENST00000485955 GRAMD1BQ3KR37 738 aa4.02□□□□□ -1.77
VPS41-213ENST00000485955 CES5AQ6NT32 575 aa4.02□□□□□ -1.77
VPS41-213ENST00000485955 LDHAL6AQ6ZMR3 332 aa4.02□□□□□ -1.77
VPS41-213ENST00000485955 USP38Q8NB14 1042 aa4.02□□□□□ -1.77
VPS41-213ENST00000485955 LSM14AQ8ND56 463 aaKnown RBP4.02□□□□□ -1.77
VPS41-213ENST00000485955 SPATA20Q8TB22 786 aa4.02□□□□□ -1.77
VPS41-213ENST00000485955 ADGRG7Q96K78 797 aa4.02□□□□□ -1.77
VPS41-213ENST00000485955 CYSLTR2Q9NS75 346 aa4.02□□□□□ -1.77
VPS41-213ENST00000485955 MALT1Q9UDY8 824 aa4.02□□□□□ -1.77
VPS41-213ENST00000485955 ICAM5Q9UMF0 924 aa4.02□□□□□ -1.77
VPS41-213ENST00000485955 SUFUQ9UMX1 484 aa4.02□□□□□ -1.77
VPS41-213ENST00000485955 GPR52Q9Y2T5 361 aa4.02□□□□□ -1.77
VPS41-213ENST00000485955 hDV102S1A0JD36 115 aa4.01□□□□□ -1.77
VPS41-213ENST00000485955 ARHGAP10A1A4S6 786 aa4.01□□□□□ -1.77
VPS41-213ENST00000485955 TYW5A2RUC4 315 aaKnown RBP4.01□□□□□ -1.77
VPS41-213ENST00000485955 HSPB2A8KAH6 182 aa4.01□□□□□ -1.77
VPS41-213ENST00000485955 HSPA12AO43301 675 aa4.01□□□□□ -1.77
VPS41-213ENST00000485955 DAOP14920 347 aa4.01□□□□□ -1.77
VPS41-213ENST00000485955 EDN2P20800 178 aa4.01□□□□□ -1.77
VPS41-213ENST00000485955 MT3P25713 68 aa4.01□□□□□ -1.77
VPS41-213ENST00000485955 HALP42357 657 aa4.01□□□□□ -1.77
VPS41-213ENST00000485955 DLX5P56178 289 aa4.01□□□□□ -1.77
VPS41-213ENST00000485955 CLDN2P57739 230 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms