RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 MRPS18BQ9Y676 258 aaKnown RBP8.16□□□□□ -1.1
USP54-211ENST00000474929 COPG1Q9Y678 874 aaKnown RBP8.16□□□□□ -1.1
USP54-211ENST00000474929 TNRC6AQ8NDV7 1962 aaKnown RBP8.15□□□□□ -1.1
USP54-211ENST00000474929 PIPSLA2A3N6 862 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 MSI1O43347 362 aaKnown RBP8.15□□□□□ -1.1
USP54-211ENST00000474929 KATNA1O75449 491 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 CEACAM4O75871 244 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 MAP3K6O95382 1288 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 TNFP01375 233 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 APOEP02649 317 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 CTSLP07711 333 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 CCNYL3P0C7X3 344 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 PDGFRAP16234 1089 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 FECHP22830 423 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 KELP23276 732 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 HTR1EP28566 365 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 ALDH4A1P30038 563 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 L1CAMP32004 1257 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 GARSP41250 739 aaKnown RBP8.15□□□□□ -1.1
USP54-211ENST00000474929 SNRPFP62306 86 aaKnown RBP8.15□□□□□ -1.1
USP54-211ENST00000474929 KRT83P78385 493 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 CYP24A1Q07973 514 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 RAPGEF1Q13905 1077 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 NFATC4Q14934 902 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 IL17AQ16552 155 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 UGT8Q16880 541 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 ALG11Q2TAA5 492 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 RILPL1Q5EBL4 403 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 BSPRYQ5W0U4 402 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 SPECC1LQ69YQ0 1117 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 TMEM71Q6P5X7 295 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 C6orf15Q6UXA7 325 aaPredicted RBP8.15□□□□□ -1.1
USP54-211ENST00000474929 TAF8Q7Z7C8 310 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 PIGZQ86VD9 579 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 TGIF2LYQ8IUE0 185 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 SIX6OS1Q8N1H7 587 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 SCML4Q8N228 414 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 TM9SF4Q92544 642 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 CCDC127Q96BQ5 260 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 AGAP3Q96P47 875 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 BARD1Q99728 777 aaKnown RBP8.15□□□□□ -1.1
USP54-211ENST00000474929 C2orf49Q9BVC5 232 aaPredicted RBP8.15□□□□□ -1.1
USP54-211ENST00000474929 TRIM55Q9BYV6 548 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 ULBP3Q9BZM4 244 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 ILKAPQ9H0C8 392 aaPredicted RBP8.15□□□□□ -1.1
USP54-211ENST00000474929 ING2Q9H160 280 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 CYP3A43Q9HB55 503 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 LRRC4Q9HBW1 653 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 MCCC2Q9HCC0 563 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.15□□□□□ -1.1
USP54-211ENST00000474929 OCIAD1Q9NX40 245 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 LUZP4Q9P127 313 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 HMGXB4Q9UGU5 601 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 B3GNT3Q9Y2A9 372 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 DGKBQ9Y6T7 804 aa8.15□□□□□ -1.1
USP54-211ENST00000474929 NSD1Q96L73 2696 aaPredicted RBP8.15□□□□□ -1.11
USP54-211ENST00000474929 JMJD1CQ15652 2540 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 DCHS2Q6V1P9 2916 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 COL6A5A8TX70 2615 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 LRP4O75096 1905 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 GOLGA6L7A0A1B0GV03 622 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 IGLON5A6NGN9 336 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 F5H5T6 163 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 KRT86O43790 486 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 TM7SF2O76062 418 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 ALPPP05187 535 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 STSP08842 583 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 FURINP09958 794 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 SRP54P61011 504 aaKnown RBP8.14□□□□□ -1.11
USP54-211ENST00000474929 GUCY1B3Q02153 619 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 MTA1Q13330 715 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 DNASE1L3Q13609 305 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 ZNF235Q14590 738 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 LYPLAL1Q5VWZ2 237 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 NADSYN1Q6IA69 706 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 BIVMQ86UB2 503 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 CHSY1Q86X52 802 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 OR2A12Q8NGT7 310 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 GRIN3AQ8TCU5 1115 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 NDRG1Q92597 394 aaKnown RBP8.14□□□□□ -1.11
USP54-211ENST00000474929 C19orf60Q96EN9 201 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 WDR92Q96MX6 357 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 TRIM62Q9BVG3 475 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 ULBP1Q9BZM6 244 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 SDCBP2Q9H190 292 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 NUCKS1Q9H1E3 243 aaKnown RBP8.14□□□□□ -1.11
USP54-211ENST00000474929 CNGB3Q9NQW8 809 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 GPR83Q9NYM4 423 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 STK17AQ9UEE5 414 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 VPS28Q9UK41 221 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 PNMA8BQ9ULN7 279 aaPredicted RBP8.14□□□□□ -1.11
USP54-211ENST00000474929 TLR6Q9Y2C9 796 aa8.14□□□□□ -1.11
USP54-211ENST00000474929 XPO1O14980 1071 aaKnown RBP8.13□□□□□ -1.11
USP54-211ENST00000474929 CLIC2O15247 247 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 B4GAT1O43505 415 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 SNRPB2P08579 225 aaKnown RBP8.13□□□□□ -1.11
USP54-211ENST00000474929 EDN3P14138 238 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 KLK2P20151 261 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 CD1CP29017 333 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 ADRA1BP35368 520 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms