RNA–Protein interactions for RNA: ENST00000474319.1

LSS-208, Transcript of lanosterol synthase, human

TSL 2

Gene LSS, Length 3,601 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSS-208	ENST00000474319	FAM47B	Q8NA70	645 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	FAM81A	Q8TBF8	368 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	MIPOL1	Q8TD10	442 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	THEG	Q9P2T0	379 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	FAF1	Q9UNN5	650 aa	Predicted RBP	10.84	□□□□□ -0.67
LSS-208	ENST00000474319	RAP2C	Q9Y3L5	183 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	TTC3	P53804	2025 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	RNF103-CHMP3	A0A140T963	221 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	KLHL33	A6NCF5	533 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	HMBS	P08397	361 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	SBK3	P0C264	359 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	PABPC4L	P0CB38	370 aa	Known RBP	10.84	□□□□□ -0.67
LSS-208	ENST00000474319	CCDC166	P0CW27	439 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	BDNF	P23560	247 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	SLC1A2	P43004	574 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	C1QTNF8	P60827	252 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	YBX1	P67809	324 aa	Known RBP	10.84	□□□□□ -0.67
LSS-208	ENST00000474319	SP3	Q02447	781 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	FAM83E	Q2M2I3	478 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	ZC3HC1	Q86WB0	502 aa	Known RBP	10.84	□□□□□ -0.67
LSS-208	ENST00000474319	CENPL	Q8N0S6	344 aa	Predicted RBP	10.84	□□□□□ -0.67
LSS-208	ENST00000474319	GPR152	Q8TDT2	470 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	ZFAND2B	Q8WV99	257 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	HDAC11	Q96DB2	347 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	DGCR14	Q96DF8	476 aa	Known RBP	10.84	□□□□□ -0.67
LSS-208	ENST00000474319	USP3	Q9Y6I4	520 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	GJB3	O75712	270 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	SIX3	O95343	332 aa	Predicted RBP	10.84	□□□□□ -0.67
LSS-208	ENST00000474319	NPR3	P17342	541 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	MAGEA6	P43360	314 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	TAF6	P49848	677 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	ECT2L	Q008S8	904 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	ZNF484	Q5JVG2	852 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	FAM117B	Q6P1L5	589 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	SLC27A1	Q6PCB7	646 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	CLEC20A	Q6ZU45	233 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	HERC6	Q8IVU3	1022 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	CNTD1	Q8N815	330 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	SNX27	Q96L92	541 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	TRMT13	Q9NUP7	481 aa	Known RBP	10.84	□□□□□ -0.67
LSS-208	ENST00000474319	MKS1	Q9NXB0	559 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	EVL	Q9UI08	416 aa	Predicted RBP	10.84	□□□□□ -0.67
LSS-208	ENST00000474319	SORCS3	Q9UPU3	1222 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	AP4S1	Q9Y587	144 aa		10.84	□□□□□ -0.67
LSS-208	ENST00000474319	C17orf102	A2RUQ5	167 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	HNRNPC	P07910	306 aa	Known RBP eCLIP	10.83	□□□□□ -0.68
LSS-208	ENST00000474319	NCK1	P16333	377 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	LILRA4	P59901	499 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	OGFRL1	Q5TC84	451 aa	Predicted RBP	10.83	□□□□□ -0.68
LSS-208	ENST00000474319	B3GNT6	Q6ZMB0	384 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	LPCAT2	Q7L5N7	544 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	SPPL2C	Q8IUH8	684 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	LSMEM2	Q8N112	164 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	GTF3C2	Q8WUA4	911 aa	Predicted RBP	10.83	□□□□□ -0.68
LSS-208	ENST00000474319	PRICKLE1	Q96MT3	831 aa	Predicted RBP	10.83	□□□□□ -0.68
LSS-208	ENST00000474319	KCNA7	Q96RP8	456 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	GAD1	Q99259	594 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	KCTD3	Q9Y597	815 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	PRORSD1P	A6NEY8	169 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	TIMM44	O43615	452 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	ASL	P04424	464 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	AKR1A1	P14550	325 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	GLDC	P23378	1020 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	GRM5	P41594	1212 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	CAP1	Q01518	475 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	PRKAA1	Q13131	559 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	PLCL1	Q15111	1095 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	VPS26B	Q4G0F5	336 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	PIGG	Q5H8A4	983 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	C17orf99	Q6UX52	265 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	ZBTB49	Q6ZSB9	765 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	CLVS1	Q8IUQ0	354 aa	Predicted RBP	10.83	□□□□□ -0.68
LSS-208	ENST00000474319	TSPAN14	Q8NG11	270 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	NUDT8	Q8WV74	236 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	CYP2S1	Q96SQ9	504 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	DOLK	Q9UPQ8	538 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	TRIM17	Q9Y577	477 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	TADA2A	O75478	443 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	POMC	P01189	267 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	ASGR1	P07306	291 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	SLC10A3	P09131	477 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	SLC5A2	P31639	672 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	NOS2	P35228	1153 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	CPT1A	P50416	773 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	PSMD7	P51665	324 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	PPID	Q08752	370 aa	Known RBP	10.83	□□□□□ -0.68
LSS-208	ENST00000474319	PPP1R8	Q12972	351 aa	Known RBP	10.83	□□□□□ -0.68
LSS-208	ENST00000474319	ZIK1	Q3SY52	487 aa	Predicted RBP	10.83	□□□□□ -0.68
LSS-208	ENST00000474319	MARCH8	Q5T0T0	291 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	NOTUM	Q6P988	496 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	PARP8	Q8N3A8	854 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	ZNF419	Q96HQ0	510 aa	Predicted RBP	10.83	□□□□□ -0.68
LSS-208	ENST00000474319	SEPHS2	Q99611	448 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	BEGAIN	Q9BUH8	593 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	RBM22	Q9NW64	420 aa	Known RBP eCLIP	10.83	□□□□□ -0.68
LSS-208	ENST00000474319	ARHGEF38	Q9NXL2	777 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	NCKIPSD	Q9NZQ3	722 aa		10.83	□□□□□ -0.68
LSS-208	ENST00000474319	TCAF2	A6NFQ2	919 aa		10.82	□□□□□ -0.68
LSS-208	ENST00000474319	MRAS	O14807	208 aa		10.82	□□□□□ -0.68
LSS-208	ENST00000474319	UBD	O15205	165 aa		10.82	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms