RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 MFSD6LQ8IWD5 586 aa12.96□□□□□ -0.33
VPS13D-205ENST00000473099 PLPP6Q8IY26 295 aa12.96□□□□□ -0.33
VPS13D-205ENST00000473099 YAF2Q8IY57 180 aa12.96□□□□□ -0.33
VPS13D-205ENST00000473099 CPA6Q8N4T0 437 aa12.96□□□□□ -0.33
VPS13D-205ENST00000473099 SLC44A1Q8WWI5 657 aa12.96□□□□□ -0.33
VPS13D-205ENST00000473099 ELSPBP1Q96BH3 223 aa12.96□□□□□ -0.33
VPS13D-205ENST00000473099 ZNF669Q96BR6 464 aaPredicted RBP12.96□□□□□ -0.33
VPS13D-205ENST00000473099 PAFAH2Q99487 392 aa12.96□□□□□ -0.33
VPS13D-205ENST00000473099 DHRS4Q9BTZ2 278 aa12.96□□□□□ -0.33
VPS13D-205ENST00000473099 APOL5Q9BWW9 433 aa12.96□□□□□ -0.33
VPS13D-205ENST00000473099 ADGRE3Q9BY15 652 aa12.96□□□□□ -0.33
VPS13D-205ENST00000473099 NOD2Q9HC29 1040 aa12.96□□□□□ -0.33
VPS13D-205ENST00000473099 NSMCE4AQ9NXX6 385 aa12.96□□□□□ -0.33
VPS13D-205ENST00000473099 CLDND1Q9NY35 253 aa12.96□□□□□ -0.33
VPS13D-205ENST00000473099 CLEC1BQ9P126 229 aa12.96□□□□□ -0.33
VPS13D-205ENST00000473099 INTS6Q9UL03 887 aaKnown RBP12.96□□□□□ -0.33
VPS13D-205ENST00000473099 RIMKLBQ9ULI2 386 aa12.96□□□□□ -0.33
VPS13D-205ENST00000473099 NOVA2Q9UNW9 492 aaKnown RBP12.96□□□□□ -0.33
VPS13D-205ENST00000473099 SLC8A2Q9UPR5 921 aa12.96□□□□□ -0.33
VPS13D-205ENST00000473099 SLC27A6Q9Y2P4 619 aa12.96□□□□□ -0.33
VPS13D-205ENST00000473099 TCAF1Q9Y4C2 921 aa12.96□□□□□ -0.33
VPS13D-205ENST00000473099 MTCH2Q9Y6C9 303 aa12.96□□□□□ -0.33
VPS13D-205ENST00000473099 MUC22E2RYF6 1773 aaPredicted RBP12.95□□□□□ -0.34
VPS13D-205ENST00000473099 TCF20Q9UGU0 1960 aaKnown RBP12.95□□□□□ -0.34
VPS13D-205ENST00000473099 SOCS5O75159 536 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 TBX10O75333 385 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 GSRP00390 522 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 NR1D1P20393 614 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 FCARP24071 287 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 DGKGP49619 791 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 RPL26P61254 145 aaKnown RBP12.95□□□□□ -0.34
VPS13D-205ENST00000473099 CRADDP78560 199 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 ECT2LQ008S8 904 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 RAD51Q06609 339 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 ILF2Q12905 390 aaKnown RBP12.95□□□□□ -0.34
VPS13D-205ENST00000473099 OLIG2Q13516 323 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 E2F5Q15329 346 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 FUT11Q495W5 492 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 SIRPB2Q5JXA9 342 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 KCTD16Q68DU8 428 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 PDPK2PQ6A1A2 396 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 NCEH1Q6PIU2 408 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 LINGO4Q6UY18 593 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 MARK2Q7KZI7 788 aaKnown RBP12.95□□□□□ -0.34
VPS13D-205ENST00000473099 CTAGE3PQ8IX95 158 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 SH2D3CQ8N5H7 860 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 PCDH20Q8N6Y1 951 aaKnown RBP12.95□□□□□ -0.34
VPS13D-205ENST00000473099 RSPRY1Q96DX4 576 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 CERS2Q96G23 380 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 TUBGCP5Q96RT8 1024 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 TRIB3Q96RU7 358 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 SRPK1Q96SB4 655 aaKnown RBP12.95□□□□□ -0.34
VPS13D-205ENST00000473099 FAM83CQ9BQN1 747 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 CNOT10Q9H9A5 744 aaKnown RBP12.95□□□□□ -0.34
VPS13D-205ENST00000473099 PLAC1Q9HBJ0 212 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 HACD3Q9P035 362 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 CLEC4EQ9ULY5 219 aa12.95□□□□□ -0.34
VPS13D-205ENST00000473099 RPL26L1Q9UNX3 145 aaKnown RBP12.95□□□□□ -0.34
VPS13D-205ENST00000473099 A0A1W2PQ67 120 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 POLR3GO15318 223 aaPredicted RBP12.94□□□□□ -0.34
VPS13D-205ENST00000473099 TIMM44O43615 452 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 ECI2O75521 394 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 KRT37O76014 449 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 KRT38O76015 456 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 ATP5BP06576 529 aaKnown RBP12.94□□□□□ -0.34
VPS13D-205ENST00000473099 SRPRAP08240 638 aaKnown RBP12.94□□□□□ -0.34
VPS13D-205ENST00000473099 ATXN1LP0C7T5 689 aaKnown RBP12.94□□□□□ -0.34
VPS13D-205ENST00000473099 SRCP12931 536 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 LAMP2P13473 410 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 PSMC3P17980 439 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 GCAP28676 217 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 GBP2P32456 591 aaPredicted RBP12.94□□□□□ -0.34
VPS13D-205ENST00000473099 EIF2DP41214 584 aaKnown RBP12.94□□□□□ -0.34
VPS13D-205ENST00000473099 RGRP47804 291 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 MAGOHP61326 146 aaKnown RBP12.94□□□□□ -0.34
VPS13D-205ENST00000473099 PDE1BQ01064 536 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 POU6F1Q14863 301 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 EIF4HQ15056 248 aaKnown RBP12.94□□□□□ -0.34
VPS13D-205ENST00000473099 TMED2Q15363 201 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 MBLAC2Q68D91 279 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 KIAA0930Q6ICG6 404 aaPredicted RBP12.94□□□□□ -0.34
VPS13D-205ENST00000473099 KDM7AQ6ZMT4 941 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 SLC25A41Q8N5S1 370 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 PPM1NQ8N819 430 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 OR2AP1Q8NGE2 309 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 BRSK1Q8TDC3 778 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 DCAKDQ8WVC6 231 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 SPOCK2Q92563 424 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 MTBPQ96DY7 904 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 MSLNLQ96KJ4 702 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 LRRC3BQ96PB8 259 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 GAS2L1Q99501 681 aaPredicted RBP12.94□□□□□ -0.34
VPS13D-205ENST00000473099 CDX2Q99626 313 aaPredicted RBP12.94□□□□□ -0.34
VPS13D-205ENST00000473099 TDRD1Q9BXT4 1180 aaKnown RBP12.94□□□□□ -0.34
VPS13D-205ENST00000473099 ATP13A3Q9H7F0 1226 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 ECT2Q9H8V3 914 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 PIH1D1Q9NWS0 290 aaKnown RBP12.94□□□□□ -0.34
VPS13D-205ENST00000473099 ZFATQ9P243 1243 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 TXNDC16Q9P2K2 825 aa12.94□□□□□ -0.34
VPS13D-205ENST00000473099 FCF1Q9Y324 198 aaKnown RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms