RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 ZBTB45Q96K62 511 aaPredicted RBP6.61□□□□□ -1.35
PTCD3-208ENST00000469585 NECTIN4Q96NY8 510 aa6.61□□□□□ -1.35
PTCD3-208ENST00000469585 APOL5Q9BWW9 433 aa6.61□□□□□ -1.35
PTCD3-208ENST00000469585 NAA15Q9BXJ9 866 aaKnown RBP6.61□□□□□ -1.35
PTCD3-208ENST00000469585 TINAGL1Q9GZM7 467 aaPredicted RBP6.61□□□□□ -1.35
PTCD3-208ENST00000469585 NUP62CLQ9H1M0 184 aa6.61□□□□□ -1.35
PTCD3-208ENST00000469585 ZNF768Q9H5H4 540 aaKnown RBP6.61□□□□□ -1.35
PTCD3-208ENST00000469585 UBE2ZQ9H832 354 aaPredicted RBP6.61□□□□□ -1.35
PTCD3-208ENST00000469585 SFXN1Q9H9B4 322 aa6.61□□□□□ -1.35
PTCD3-208ENST00000469585 PTPRHQ9HD43 1115 aa6.61□□□□□ -1.35
PTCD3-208ENST00000469585 DPP3Q9NY33 737 aa6.61□□□□□ -1.35
PTCD3-208ENST00000469585 CD207Q9UJ71 328 aa6.61□□□□□ -1.35
PTCD3-208ENST00000469585 CPSF3Q9UKF6 684 aaKnown RBP6.61□□□□□ -1.35
PTCD3-208ENST00000469585 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.61□□□□□ -1.35
PTCD3-208ENST00000469585 FNDC1Q4ZHG4 1894 aaPredicted RBP6.61□□□□□ -1.35
PTCD3-208ENST00000469585 FAM237AA0A1B0GTK4 181 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 TTC26A0AVF1 554 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 GOLGA8IPA6NC78 632 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 EPOPA6NHQ4 379 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 GOLGA8JA6NMD2 632 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 KRTAP9-7A8MTY7 169 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 LACTBL1A8MY62 500 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 FAM20BO75063 409 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 DDHD2O94830 711 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 GNA14O95837 355 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 C1RP00736 705 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 NR3C1P04150 777 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 NR2F2P24468 414 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 PSMC2P35998 433 aaKnown RBP6.6□□□□□ -1.35
PTCD3-208ENST00000469585 MTHFRP42898 656 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 KCNJ5P48544 419 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 CLCNKBP51801 687 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 ARPP19P56211 112 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 POU6F2P78424 691 aaPredicted RBP6.6□□□□□ -1.35
PTCD3-208ENST00000469585 MYL7Q01449 175 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 OCA2Q04671 838 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 LRRC63Q05C16 580 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 SMARCB1Q12824 385 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 BFSP1Q12934 665 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 PLD1Q13393 1074 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 PNOCQ13519 176 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 VEPH1Q14D04 833 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 MAPRE1Q15691 268 aaKnown RBP6.6□□□□□ -1.35
PTCD3-208ENST00000469585 CNGA2Q16280 664 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 DUSP6Q16828 381 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 UPP1Q16831 310 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 CCDC40Q4G0X9 1142 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 CTXN3Q4LDR2 81 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 IL31Q6EBC2 164 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 SASS6Q6UVJ0 657 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 CYP26C1Q6V0L0 522 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 INTS8Q75QN2 995 aaKnown RBP6.6□□□□□ -1.35
PTCD3-208ENST00000469585 RTL10Q7L3V2 364 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 PPP1R32Q7Z5V6 425 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 CREBRFQ8IUR6 639 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 WDR49Q8IV35 697 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 FAM114A1Q8IWE2 563 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 BRSK2Q8IWQ3 736 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 DCP1BQ8IZD4 617 aaKnown RBP6.6□□□□□ -1.35
PTCD3-208ENST00000469585 GUF1Q8N442 669 aaKnown RBP6.6□□□□□ -1.35
PTCD3-208ENST00000469585 Q8NA96 180 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 SVIPQ8NHG7 77 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 MAML1Q92585 1016 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 CCDC127Q96BQ5 260 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 SLC39A13Q96H72 371 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 PPP1R10Q96QC0 940 aaKnown RBP6.6□□□□□ -1.35
PTCD3-208ENST00000469585 GCNAQ96QF7 691 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 MMS19Q96T76 1030 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 ZSWIM1Q9BR11 485 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 SLC46A2Q9BY10 475 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 NAT10Q9H0A0 1025 aaKnown RBP6.6□□□□□ -1.35
PTCD3-208ENST00000469585 BTBD1Q9H0C5 482 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 ZBP1Q9H171 429 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 PLEKHA4Q9H4M7 779 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 SMURF2Q9HAU4 748 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 AGPAT3Q9NRZ7 376 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 MRPS18AQ9NVS2 196 aaKnown RBP6.6□□□□□ -1.35
PTCD3-208ENST00000469585 FNIP2Q9P278 1114 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 CPNE7Q9UBL6 633 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 MAFFQ9ULX9 164 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 STYXL1Q9Y6J8 313 aa6.6□□□□□ -1.35
PTCD3-208ENST00000469585 CITO14578 2027 aa6.59□□□□□ -1.35
PTCD3-208ENST00000469585 COL4A4P53420 1690 aaPredicted RBP6.59□□□□□ -1.35
PTCD3-208ENST00000469585 ATP8B3O60423 1300 aa6.59□□□□□ -1.35
PTCD3-208ENST00000469585 PTPRSQ13332 1948 aa6.59□□□□□ -1.35
PTCD3-208ENST00000469585 OR6C75A6NL08 312 aa6.59□□□□□ -1.35
PTCD3-208ENST00000469585 MARCH11A6NNE9 402 aa6.59□□□□□ -1.35
PTCD3-208ENST00000469585 ANKRD63C9JTQ0 380 aa6.59□□□□□ -1.35
PTCD3-208ENST00000469585 PTGESO14684 152 aa6.59□□□□□ -1.35
PTCD3-208ENST00000469585 PER2O15055 1255 aa6.59□□□□□ -1.35
PTCD3-208ENST00000469585 CLIC2O15247 247 aa6.59□□□□□ -1.35
PTCD3-208ENST00000469585 N4BP1O75113 896 aaKnown RBP6.59□□□□□ -1.35
PTCD3-208ENST00000469585 CFIP05156 583 aa6.59□□□□□ -1.35
PTCD3-208ENST00000469585 SPATA31D3P0C874 917 aa6.59□□□□□ -1.35
PTCD3-208ENST00000469585 CCDC192P0DO97 292 aa6.59□□□□□ -1.35
PTCD3-208ENST00000469585 FDXRP22570 491 aa6.59□□□□□ -1.35
PTCD3-208ENST00000469585 NR4A1P22736 598 aa6.59□□□□□ -1.35
PTCD3-208ENST00000469585 ZFP36P26651 326 aaKnown RBP6.59□□□□□ -1.35
PTCD3-208ENST00000469585 LRPAP1P30533 357 aa6.59□□□□□ -1.35
PTCD3-208ENST00000469585 TNFSF9P41273 254 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms