RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 HDCP19113 662 aa19.27■□□□□ 0.67
VIM-203ENST00000469543 PIK3R1P27986 724 aa19.27■□□□□ 0.67
VIM-203ENST00000469543 CYP2C18P33260 490 aa19.27■□□□□ 0.67
VIM-203ENST00000469543 ASPHQ12797 758 aa19.27■□□□□ 0.67
VIM-203ENST00000469543 TRIM71Q2Q1W2 868 aaKnown RBP19.27■□□□□ 0.67
VIM-203ENST00000469543 SH2D4BQ5SQS7 431 aa19.27■□□□□ 0.67
VIM-203ENST00000469543 RASIP1Q5U651 963 aa19.27■□□□□ 0.67
VIM-203ENST00000469543 POTEHQ6S545 545 aa19.27■□□□□ 0.67
VIM-203ENST00000469543 KDELC1Q6UW63 502 aa19.27■□□□□ 0.67
VIM-203ENST00000469543 GLB1LQ6UWU2 654 aa19.27■□□□□ 0.67
VIM-203ENST00000469543 RSPO2Q6UXX9 243 aaPredicted RBP19.27■□□□□ 0.67
VIM-203ENST00000469543 PIM3Q86V86 326 aa19.27■□□□□ 0.67
VIM-203ENST00000469543 KLHDC8BQ8IXV7 354 aa19.27■□□□□ 0.67
VIM-203ENST00000469543 C2CD4AQ8NCU7 369 aaPredicted RBP19.27■□□□□ 0.67
VIM-203ENST00000469543 POMKQ9H5K3 350 aa19.27■□□□□ 0.67
VIM-203ENST00000469543 CPB1P15086 417 aa19.26■□□□□ 0.67
VIM-203ENST00000469543 ACVRL1P37023 503 aa19.26■□□□□ 0.67
VIM-203ENST00000469543 VARS2Q5ST30 1063 aaKnown RBP19.26■□□□□ 0.67
VIM-203ENST00000469543 PAXIP1Q6ZW49 1069 aaPredicted RBP19.26■□□□□ 0.67
VIM-203ENST00000469543 MON1AQ86VX9 555 aa19.26■□□□□ 0.67
VIM-203ENST00000469543 LMNTD2Q8IXW0 634 aa19.26■□□□□ 0.67
VIM-203ENST00000469543 SCML4Q8N228 414 aa19.26■□□□□ 0.67
VIM-203ENST00000469543 LZTR1Q8N653 840 aa19.26■□□□□ 0.67
VIM-203ENST00000469543 SLC39A13Q96H72 371 aa19.26■□□□□ 0.67
VIM-203ENST00000469543 GPR62Q9BZJ7 368 aa19.26■□□□□ 0.67
VIM-203ENST00000469543 ATP5BP06576 529 aaKnown RBP19.26■□□□□ 0.67
VIM-203ENST00000469543 ZCCHC18P0CG32 403 aa19.26■□□□□ 0.67
VIM-203ENST00000469543 CD151P48509 253 aa19.26■□□□□ 0.67
VIM-203ENST00000469543 ZNF33AQ06730 810 aa19.26■□□□□ 0.67
VIM-203ENST00000469543 MARC1Q5VT66 337 aa19.26■□□□□ 0.67
VIM-203ENST00000469543 FAM171A1Q5VUB5 890 aa19.26■□□□□ 0.67
VIM-203ENST00000469543 TMEM207Q6UWW9 146 aa19.26■□□□□ 0.67
VIM-203ENST00000469543 TRIM67Q6ZTA4 783 aa19.26■□□□□ 0.67
VIM-203ENST00000469543 FAM156AQ8NDB6 213 aa19.26■□□□□ 0.67
VIM-203ENST00000469543 SERPINB11Q96P15 392 aa19.26■□□□□ 0.67
VIM-203ENST00000469543 SMIM14Q96QK8 99 aa19.26■□□□□ 0.67
VIM-203ENST00000469543 UXTQ9UBK9 157 aaPredicted RBP19.26■□□□□ 0.67
VIM-203ENST00000469543 ARHGAP26Q9UNA1 814 aa19.26■□□□□ 0.67
VIM-203ENST00000469543 LRCH1Q9Y2L9 728 aa19.26■□□□□ 0.67
VIM-203ENST00000469543 PDE4DIPQ5VU43 2346 aa19.26■□□□□ 0.67
VIM-203ENST00000469543 MUSKO15146 869 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 TADA2AO75478 443 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 PRSS56P0CW18 603 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 CCDC166P0CW27 439 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 TCN1P20061 433 aaPredicted RBP19.25■□□□□ 0.67
VIM-203ENST00000469543 COLGALT2Q8IYK4 626 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 ZNF683Q8IZ20 524 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 FBXW8Q8N3Y1 598 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 KDM1BQ8NB78 822 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 HDAC10Q969S8 669 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 RCN3Q96D15 328 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 ANKRD27Q96NW4 1050 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 ZCWPW1Q9H0M4 648 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 IGSF5Q9NSI5 407 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 PCDHB8Q9UN66 801 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 TLR6Q9Y2C9 796 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 CCNT2O60583 730 aaKnown RBP19.25■□□□□ 0.67
VIM-203ENST00000469543 SLC10A3P09131 477 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 SKIP12755 728 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 MYL4P12829 197 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 DPP6P42658 865 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 FCGRTP55899 365 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 TAF10Q12962 218 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 MSLNQ13421 630 aaPredicted RBP19.25■□□□□ 0.67
VIM-203ENST00000469543 PPP1R3AQ16821 1122 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 FSCBQ5H9T9 825 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 RNF220Q5VTB9 566 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 ISLR2Q6UXK2 745 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 SREK1Q8WXA9 508 aaKnown RBP19.25■□□□□ 0.67
VIM-203ENST00000469543 IMP4Q96G21 291 aaKnown RBP19.25■□□□□ 0.67
VIM-203ENST00000469543 CDRT15Q96T59 188 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 CCSER2Q9H7U1 834 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 GTSE1Q9NYZ3 720 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 ANGPTL2Q9UKU9 493 aa19.25■□□□□ 0.67
VIM-203ENST00000469543 MYO16Q9Y6X6 1858 aa19.24■□□□□ 0.67
VIM-203ENST00000469543 PSMD3O43242 534 aa19.24■□□□□ 0.67
VIM-203ENST00000469543 SLC12A2P55011 1212 aa19.24■□□□□ 0.67
VIM-203ENST00000469543 CDKN2DP55273 166 aa19.24■□□□□ 0.67
VIM-203ENST00000469543 CDC16Q13042 620 aa19.24■□□□□ 0.67
VIM-203ENST00000469543 C10orf120Q5SQS8 335 aa19.24■□□□□ 0.67
VIM-203ENST00000469543 ANKRD6Q9Y2G4 727 aa19.24■□□□□ 0.67
VIM-203ENST00000469543 ARL5AQ9Y689 179 aa19.24■□□□□ 0.67
VIM-203ENST00000469543 OAZ2O95190 189 aa19.24■□□□□ 0.67
VIM-203ENST00000469543 TYMPP19971 482 aa19.24■□□□□ 0.67
VIM-203ENST00000469543 PEX2P28328 305 aa19.24■□□□□ 0.67
VIM-203ENST00000469543 PEX19P40855 299 aa19.24■□□□□ 0.67
VIM-203ENST00000469543 SERPINH1P50454 418 aaKnown RBP19.24■□□□□ 0.67
VIM-203ENST00000469543 DSC1Q08554 894 aa19.24■□□□□ 0.67
VIM-203ENST00000469543 UGP2Q16851 508 aa19.24■□□□□ 0.67
VIM-203ENST00000469543 CTXN3Q4LDR2 81 aa19.24■□□□□ 0.67
VIM-203ENST00000469543 SIRPB2Q5JXA9 342 aa19.24■□□□□ 0.67
VIM-203ENST00000469543 TIGD7Q6NT04 549 aaPredicted RBP19.24■□□□□ 0.67
VIM-203ENST00000469543 BEND5Q7L4P6 421 aa19.24■□□□□ 0.67
VIM-203ENST00000469543 DSELQ8IZU8 1212 aa19.24■□□□□ 0.67
VIM-203ENST00000469543 GIPC2Q8TF65 315 aa19.24■□□□□ 0.67
VIM-203ENST00000469543 RPRD1AQ96P16 312 aaPredicted RBP19.24■□□□□ 0.67
VIM-203ENST00000469543 SEPT5Q99719 369 aaPredicted RBP19.24■□□□□ 0.67
VIM-203ENST00000469543 NPAS2Q99743 824 aa19.24■□□□□ 0.67
VIM-203ENST00000469543 ZYG11BQ9C0D3 744 aa19.24■□□□□ 0.67
VIM-203ENST00000469543 YIPF3Q9GZM5 350 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms