RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 BPTFQ12830 3046 aa16.78■□□□□ 0.28
CCDC28B-204ENST00000469003 K7ESM1 405 aa16.78■□□□□ 0.28
CCDC28B-204ENST00000469003 MT-CO3P00414 261 aa16.78■□□□□ 0.28
CCDC28B-204ENST00000469003 DUSP3P51452 185 aaPredicted RBP16.78■□□□□ 0.28
CCDC28B-204ENST00000469003 TPI1P60174 286 aa16.78■□□□□ 0.28
CCDC28B-204ENST00000469003 PDE1CQ14123 709 aaPredicted RBP16.78■□□□□ 0.28
CCDC28B-204ENST00000469003 ANO6Q4KMQ2 910 aa16.78■□□□□ 0.28
CCDC28B-204ENST00000469003 NETO2Q8NC67 525 aa16.78■□□□□ 0.28
CCDC28B-204ENST00000469003 ZNF548Q8NEK5 533 aaPredicted RBP16.78■□□□□ 0.28
CCDC28B-204ENST00000469003 CENPTQ96BT3 561 aa16.78■□□□□ 0.28
CCDC28B-204ENST00000469003 BPIFA3Q9BQP9 254 aa16.78■□□□□ 0.28
CCDC28B-204ENST00000469003 CPEB1Q9BZB8 566 aaKnown RBP16.78■□□□□ 0.28
CCDC28B-204ENST00000469003 RTN4Q9NQC3 1192 aaKnown RBP16.78■□□□□ 0.28
CCDC28B-204ENST00000469003 PARVAQ9NVD7 372 aa16.78■□□□□ 0.28
CCDC28B-204ENST00000469003 LHX3Q9UBR4 397 aa16.78■□□□□ 0.28
CCDC28B-204ENST00000469003 CSNK1G3Q9Y6M4 447 aa16.78■□□□□ 0.28
CCDC28B-204ENST00000469003 LY6G6EA0A0G2JKS1 128 aa16.77■□□□□ 0.28
CCDC28B-204ENST00000469003 EIF3CLB5ME19 914 aaKnown RBP16.77■□□□□ 0.28
CCDC28B-204ENST00000469003 NEBLO76041 1014 aa16.77■□□□□ 0.28
CCDC28B-204ENST00000469003 TM7SF2O76062 418 aa16.77■□□□□ 0.28
CCDC28B-204ENST00000469003 GP1BAP07359 652 aa16.77■□□□□ 0.28
CCDC28B-204ENST00000469003 TIMP2P16035 220 aa16.77■□□□□ 0.28
CCDC28B-204ENST00000469003 JUNDP17535 347 aa16.77■□□□□ 0.28
CCDC28B-204ENST00000469003 IGFALSP35858 605 aa16.77■□□□□ 0.28
CCDC28B-204ENST00000469003 SUOXP51687 545 aa16.77■□□□□ 0.28
CCDC28B-204ENST00000469003 SEMG2Q02383 582 aa16.77■□□□□ 0.28
CCDC28B-204ENST00000469003 MAMLD1Q13495 774 aa16.77■□□□□ 0.28
CCDC28B-204ENST00000469003 CYTH1Q15438 398 aa16.77■□□□□ 0.28
CCDC28B-204ENST00000469003 LRRC73Q5JTD7 316 aa16.77■□□□□ 0.28
CCDC28B-204ENST00000469003 TPRG1LQ5T0D9 272 aa16.77■□□□□ 0.28
CCDC28B-204ENST00000469003 PLEKHA7Q6IQ23 1121 aa16.77■□□□□ 0.28
CCDC28B-204ENST00000469003 HCAR2Q8TDS4 363 aa16.77■□□□□ 0.28
CCDC28B-204ENST00000469003 CXorf40AQ8TE69 158 aa16.77■□□□□ 0.28
CCDC28B-204ENST00000469003 EIF3CQ99613 913 aaKnown RBP16.77■□□□□ 0.28
CCDC28B-204ENST00000469003 C1QTNF7Q9BXJ2 289 aa16.77■□□□□ 0.28
CCDC28B-204ENST00000469003 LRRC19Q9H756 370 aa16.77■□□□□ 0.28
CCDC28B-204ENST00000469003 GPATCH2LQ9NWQ4 482 aa16.77■□□□□ 0.28
CCDC28B-204ENST00000469003 TMEM63CQ9P1W3 806 aa16.77■□□□□ 0.28
CCDC28B-204ENST00000469003 UBA2Q9UBT2 640 aaPredicted RBP16.77■□□□□ 0.28
CCDC28B-204ENST00000469003 KLF15Q9UIH9 416 aa16.77■□□□□ 0.28
CCDC28B-204ENST00000469003 AP4E1Q9UPM8 1137 aa16.77■□□□□ 0.28
CCDC28B-204ENST00000469003 U3KQA8 63 aa16.77■□□□□ 0.28
CCDC28B-204ENST00000469003 LRRC53A6NM62 1247 aa16.76■□□□□ 0.27
CCDC28B-204ENST00000469003 SMTNL1A8MU46 457 aa16.76■□□□□ 0.27
CCDC28B-204ENST00000469003 TMCO5BA8MYB1 307 aa16.76■□□□□ 0.27
CCDC28B-204ENST00000469003 INSIG1O15503 277 aa16.76■□□□□ 0.27
CCDC28B-204ENST00000469003 AQP9O43315 295 aa16.76■□□□□ 0.27
CCDC28B-204ENST00000469003 TLX3O43711 291 aaPredicted RBP16.76■□□□□ 0.27
CCDC28B-204ENST00000469003 OPA1O60313 960 aa16.76■□□□□ 0.27
CCDC28B-204ENST00000469003 MMP20O60882 483 aa16.76■□□□□ 0.27
CCDC28B-204ENST00000469003 PSMA2P25787 234 aa16.76■□□□□ 0.27
CCDC28B-204ENST00000469003 NDST2P52849 883 aa16.76■□□□□ 0.27
CCDC28B-204ENST00000469003 YPEL5P62699 121 aa16.76■□□□□ 0.27
CCDC28B-204ENST00000469003 EIF2B5Q13144 721 aaKnown RBP16.76■□□□□ 0.27
CCDC28B-204ENST00000469003 PTK2BQ14289 1009 aa16.76■□□□□ 0.27
CCDC28B-204ENST00000469003 GRM3Q14832 879 aa16.76■□□□□ 0.27
CCDC28B-204ENST00000469003 ASIC2Q16515 512 aa16.76■□□□□ 0.27
CCDC28B-204ENST00000469003 TMEM52BQ4KMG9 183 aa16.76■□□□□ 0.27
CCDC28B-204ENST00000469003 FILIP1LQ4L180 1135 aa16.76■□□□□ 0.27
CCDC28B-204ENST00000469003 CDCP2Q5VXM1 449 aa16.76■□□□□ 0.27
CCDC28B-204ENST00000469003 ZCCHC8Q6NZY4 707 aaKnown RBP16.76■□□□□ 0.27
CCDC28B-204ENST00000469003 KDM7AQ6ZMT4 941 aa16.76■□□□□ 0.27
CCDC28B-204ENST00000469003 VPS36Q86VN1 386 aa16.76■□□□□ 0.27
CCDC28B-204ENST00000469003 DNAAF5Q86Y56 855 aa16.76■□□□□ 0.27
CCDC28B-204ENST00000469003 BTN2A2Q8WVV5 523 aa16.76■□□□□ 0.27
CCDC28B-204ENST00000469003 DCBLD2Q96PD2 775 aa16.76■□□□□ 0.27
CCDC28B-204ENST00000469003 NCAPGQ9BPX3 1015 aa16.76■□□□□ 0.27
CCDC28B-204ENST00000469003 PDFQ9HBH1 243 aa16.76■□□□□ 0.27
CCDC28B-204ENST00000469003 TSPAN11A1L157 253 aa16.75■□□□□ 0.27
CCDC28B-204ENST00000469003 EEF2KO00418 725 aaKnown RBP16.75■□□□□ 0.27
CCDC28B-204ENST00000469003 TOR1BO14657 336 aa16.75■□□□□ 0.27
CCDC28B-204ENST00000469003 RIOK3O14730 519 aaKnown RBP16.75■□□□□ 0.27
CCDC28B-204ENST00000469003 ATMINO43313 823 aaPredicted RBP16.75■□□□□ 0.27
CCDC28B-204ENST00000469003 PRAMEF11O60813 436 aa16.75■□□□□ 0.27
CCDC28B-204ENST00000469003 PIGNO95427 931 aa16.75■□□□□ 0.27
CCDC28B-204ENST00000469003 GZMAP12544 262 aa16.75■□□□□ 0.27
CCDC28B-204ENST00000469003 MYF5P13349 255 aa16.75■□□□□ 0.27
CCDC28B-204ENST00000469003 ITIH2P19823 946 aa16.75■□□□□ 0.27
CCDC28B-204ENST00000469003 XPAP23025 273 aaPredicted RBP16.75■□□□□ 0.27
CCDC28B-204ENST00000469003 THOP1P52888 689 aa16.75■□□□□ 0.27
CCDC28B-204ENST00000469003 ELP6Q0PNE2 266 aa16.75■□□□□ 0.27
CCDC28B-204ENST00000469003 CA9Q16790 459 aa16.75■□□□□ 0.27
CCDC28B-204ENST00000469003 ERMARDQ5T6L9 678 aa16.75■□□□□ 0.27
CCDC28B-204ENST00000469003 ARFGAP1Q8N6T3 406 aa16.75■□□□□ 0.27
CCDC28B-204ENST00000469003 TP53I13Q8NBR0 393 aaPredicted RBP16.75■□□□□ 0.27
CCDC28B-204ENST00000469003 EXOC2Q96KP1 924 aa16.75■□□□□ 0.27
CCDC28B-204ENST00000469003 BBC3Q96PG8 261 aaPredicted RBP16.75■□□□□ 0.27
CCDC28B-204ENST00000469003 SNRNP25Q9BV90 132 aaKnown RBP16.75■□□□□ 0.27
CCDC28B-204ENST00000469003 DHX35Q9H5Z1 703 aaKnown RBP16.75■□□□□ 0.27
CCDC28B-204ENST00000469003 HAUS4Q9H6D7 363 aa16.75■□□□□ 0.27
CCDC28B-204ENST00000469003 AIPL1Q9NZN9 384 aa16.75■□□□□ 0.27
CCDC28B-204ENST00000469003 NCKIPSDQ9NZQ3 722 aa16.75■□□□□ 0.27
CCDC28B-204ENST00000469003 SPASTQ9UBP0 616 aa16.75■□□□□ 0.27
CCDC28B-204ENST00000469003 SALL4Q9UJQ4 1053 aa16.75■□□□□ 0.27
CCDC28B-204ENST00000469003 A0A1W2PQC6 194 aa16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 TMEM191CA6NGB0 347 aa16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 ARHGAP42A6NI28 874 aa16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 J3KR12 359 aa16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 TPP1O14773 563 aa16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 RNF8O76064 485 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms