RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 IL12RB2Q99665 862 aa21.34■■□□□ 1.01
COL9A3-207ENST00000467819 TTYH3Q9C0H2 523 aa21.34■■□□□ 1.01
COL9A3-207ENST00000467819 APOBEC3BQ9UH17 382 aaKnown RBP21.34■■□□□ 1.01
COL9A3-207ENST00000467819 LRP4O75096 1905 aa21.33■■□□□ 1.01
COL9A3-207ENST00000467819 SIGLEC16A6NMB1 481 aa21.33■■□□□ 1.01
COL9A3-207ENST00000467819 PRB1P04280 392 aa21.33■■□□□ 1.01
COL9A3-207ENST00000467819 C1orf61Q13536 156 aa21.33■■□□□ 1.01
COL9A3-207ENST00000467819 CRTC1Q6UUV9 634 aa21.33■■□□□ 1.01
COL9A3-207ENST00000467819 SPACA3Q8IXA5 215 aa21.33■■□□□ 1.01
COL9A3-207ENST00000467819 BTN2A2Q8WVV5 523 aa21.33■■□□□ 1.01
COL9A3-207ENST00000467819 CENPTQ96BT3 561 aa21.33■■□□□ 1.01
COL9A3-207ENST00000467819 EXOC2Q96KP1 924 aa21.33■■□□□ 1.01
COL9A3-207ENST00000467819 MCEEQ96PE7 176 aa21.33■■□□□ 1.01
COL9A3-207ENST00000467819 WRAP53Q9BUR4 548 aaKnown RBP21.33■■□□□ 1.01
COL9A3-207ENST00000467819 SPASTQ9UBP0 616 aa21.33■■□□□ 1.01
COL9A3-207ENST00000467819 MGAQ8IWI9 3026 aa21.32■■□□□ 1
COL9A3-207ENST00000467819 ANKRD62A6NC57 917 aa21.32■■□□□ 1
COL9A3-207ENST00000467819 LGALS16A8MUM7 142 aa21.32■■□□□ 1
COL9A3-207ENST00000467819 RASA4BC9J798 803 aa21.32■■□□□ 1
COL9A3-207ENST00000467819 INSIG1O15503 277 aa21.32■■□□□ 1
COL9A3-207ENST00000467819 RASA4O43374 803 aa21.32■■□□□ 1
COL9A3-207ENST00000467819 TM7SF2O76062 418 aa21.32■■□□□ 1
COL9A3-207ENST00000467819 TGM2P21980 687 aa21.32■■□□□ 1
COL9A3-207ENST00000467819 PCBP4P57723 403 aaKnown RBP21.32■■□□□ 1
COL9A3-207ENST00000467819 TLE3Q04726 772 aa21.32■■□□□ 1
COL9A3-207ENST00000467819 PTK2BQ14289 1009 aa21.32■■□□□ 1
COL9A3-207ENST00000467819 PRRT3Q5FWE3 981 aa21.32■■□□□ 1
COL9A3-207ENST00000467819 PHACTR4Q8IZ21 702 aa21.32■■□□□ 1
COL9A3-207ENST00000467819 ANKRD20A12PQ8NF67 263 aa21.32■■□□□ 1
COL9A3-207ENST00000467819 CASKIN2Q8WXE0 1202 aa21.32■■□□□ 1
COL9A3-207ENST00000467819 ZNF578Q96N58 590 aaPredicted RBP21.32■■□□□ 1
COL9A3-207ENST00000467819 EPAS1Q99814 870 aa21.32■■□□□ 1
COL9A3-207ENST00000467819 NCAPGQ9BPX3 1015 aa21.32■■□□□ 1
COL9A3-207ENST00000467819 C1QTNF7Q9BXJ2 289 aa21.32■■□□□ 1
COL9A3-207ENST00000467819 MBNL1Q9NR56 388 aaKnown RBP21.32■■□□□ 1
COL9A3-207ENST00000467819 NCKIPSDQ9NZQ3 722 aa21.32■■□□□ 1
COL9A3-207ENST00000467819 LIMA1Q9UHB6 759 aaKnown RBP21.32■■□□□ 1
COL9A3-207ENST00000467819 SALL4Q9UJQ4 1053 aa21.32■■□□□ 1
COL9A3-207ENST00000467819 PNMA8BQ9ULN7 279 aaPredicted RBP21.32■■□□□ 1
COL9A3-207ENST00000467819 FZD10Q9ULW2 581 aa21.32■■□□□ 1
COL9A3-207ENST00000467819 KALRNO60229 2985 aa21.32■■□□□ 1
COL9A3-207ENST00000467819 GCATO75600 419 aa21.31■■□□□ 1
COL9A3-207ENST00000467819 PIGNO95427 931 aa21.31■■□□□ 1
COL9A3-207ENST00000467819 TIMP2P16035 220 aa21.31■■□□□ 1
COL9A3-207ENST00000467819 XPAP23025 273 aaPredicted RBP21.31■■□□□ 1
COL9A3-207ENST00000467819 ZNF143P52747 638 aaPredicted RBP21.31■■□□□ 1
COL9A3-207ENST00000467819 ADKP55263 362 aaKnown RBP21.31■■□□□ 1
COL9A3-207ENST00000467819 YBEYP58557 167 aaPredicted RBP21.31■■□□□ 1
COL9A3-207ENST00000467819 RPL7AP62424 266 aaKnown RBP21.31■■□□□ 1
COL9A3-207ENST00000467819 UBXN1Q04323 297 aa21.31■■□□□ 1
COL9A3-207ENST00000467819 C1QBPQ07021 282 aaKnown RBP21.31■■□□□ 1
COL9A3-207ENST00000467819 SERINC3Q13530 473 aa21.31■■□□□ 1
COL9A3-207ENST00000467819 NR0B2Q15466 257 aa21.31■■□□□ 1
COL9A3-207ENST00000467819 KLHL40Q2TBA0 621 aa21.31■■□□□ 1
COL9A3-207ENST00000467819 INO80DQ53TQ3 878 aaPredicted RBP21.31■■□□□ 1
COL9A3-207ENST00000467819 ZNF248Q8NDW4 579 aa21.31■■□□□ 1
COL9A3-207ENST00000467819 AGPAT1Q99943 283 aa21.31■■□□□ 1
COL9A3-207ENST00000467819 LRRC61Q9BV99 259 aa21.31■■□□□ 1
COL9A3-207ENST00000467819 CATSPERBQ9H7T0 1116 aa21.31■■□□□ 1
COL9A3-207ENST00000467819 POLR1BQ9H9Y6 1135 aa21.31■■□□□ 1
COL9A3-207ENST00000467819 LHX3Q9UBR4 397 aa21.31■■□□□ 1
COL9A3-207ENST00000467819 COQ6Q9Y2Z9 468 aa21.31■■□□□ 1
COL9A3-207ENST00000467819 TCRBV5S1A1TA0A578 114 aa21.3■■□□□ 1
COL9A3-207ENST00000467819 TPP1O14773 563 aa21.3■■□□□ 1
COL9A3-207ENST00000467819 MUSKO15146 869 aa21.3■■□□□ 1
COL9A3-207ENST00000467819 EIF4A3P38919 411 aaKnown RBP21.3■■□□□ 1
COL9A3-207ENST00000467819 LSSP48449 732 aa21.3■■□□□ 1
COL9A3-207ENST00000467819 YPEL5P62699 121 aa21.3■■□□□ 1
COL9A3-207ENST00000467819 CXADRP78310 365 aa21.3■■□□□ 1
COL9A3-207ENST00000467819 MYL5Q02045 173 aa21.3■■□□□ 1
COL9A3-207ENST00000467819 ISXQ2M1V0 245 aa21.3■■□□□ 1
COL9A3-207ENST00000467819 PARP15Q460N3 678 aa21.3■■□□□ 1
COL9A3-207ENST00000467819 C3orf38Q5JPI3 329 aa21.3■■□□□ 1
COL9A3-207ENST00000467819 PERM1Q5SV97 790 aa21.3■■□□□ 1
COL9A3-207ENST00000467819 FAXCQ5TGI0 409 aa21.3■■□□□ 1
COL9A3-207ENST00000467819 MACC1Q6ZN28 852 aa21.3■■□□□ 1
COL9A3-207ENST00000467819 GPR155Q7Z3F1 870 aa21.3■■□□□ 1
COL9A3-207ENST00000467819 LSMEM2Q8N112 164 aa21.3■■□□□ 1
COL9A3-207ENST00000467819 TP53I13Q8NBR0 393 aaPredicted RBP21.3■■□□□ 1
COL9A3-207ENST00000467819 SLC39A7Q92504 469 aa21.3■■□□□ 1
COL9A3-207ENST00000467819 CNPY3Q9BT09 278 aa21.3■■□□□ 1
COL9A3-207ENST00000467819 SLC13A1Q9BZW2 595 aa21.3■■□□□ 1
COL9A3-207ENST00000467819 DKK3Q9UBP4 350 aa21.3■■□□□ 1
COL9A3-207ENST00000467819 MFHAS1Q9Y4C4 1052 aa21.3■■□□□ 1
COL9A3-207ENST00000467819 HELZ2Q9BYK8 2649 aaKnown RBP21.29■■□□□ 1
COL9A3-207ENST00000467819 EME2A4GXA9 379 aaPredicted RBP21.29■■□□□ 1
COL9A3-207ENST00000467819 WASH4PA8MWX3 477 aa21.29■■□□□ 1
COL9A3-207ENST00000467819 ATXN7O15265 892 aaPredicted RBP21.29■■□□□ 1
COL9A3-207ENST00000467819 ANXA6P08133 673 aa21.29■■□□□ 1
COL9A3-207ENST00000467819 IRF4Q15306 451 aa21.29■■□□□ 1
COL9A3-207ENST00000467819 CYTH1Q15438 398 aa21.29■■□□□ 1
COL9A3-207ENST00000467819 DCUN1D2Q6PH85 259 aa21.29■■□□□ 1
COL9A3-207ENST00000467819 SASS6Q6UVJ0 657 aa21.29■■□□□ 1
COL9A3-207ENST00000467819 RBM43Q6ZSC3 357 aaKnown RBP21.29■■□□□ 1
COL9A3-207ENST00000467819 SLC35F3Q8IY50 421 aa21.29■■□□□ 1
COL9A3-207ENST00000467819 GLMNQ92990 594 aa21.29■■□□□ 1
COL9A3-207ENST00000467819 HIC2Q96JB3 615 aa21.29■■□□□ 1
COL9A3-207ENST00000467819 BOCQ9BWV1 1114 aa21.29■■□□□ 1
COL9A3-207ENST00000467819 GPATCH2LQ9NWQ4 482 aa21.29■■□□□ 1
COL9A3-207ENST00000467819 UBA2Q9UBT2 640 aaPredicted RBP21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms