RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 HNRNPDQ14103 355 aaKnown RBP9.03□□□□□ -0.96
SYNE1-217ENST00000466159 CSHL1Q14406 222 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 MBTPS1Q14703 1052 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 ZRSR2Q15696 482 aaKnown RBP9.03□□□□□ -0.96
SYNE1-217ENST00000466159 PDCD2Q16342 344 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-217ENST00000466159 FAM26DQ5JW98 314 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 NXNQ6DKJ4 435 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 CAPRIN2Q6IMN6 1127 aaKnown RBP9.03□□□□□ -0.96
SYNE1-217ENST00000466159 IZUMO2Q6UXV1 221 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 LCA5Q86VQ0 697 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 SNX32Q86XE0 403 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 ZNF354CQ86Y25 554 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 RNF135Q8IUD6 432 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 COLGALT2Q8IYK4 626 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 UMODL1-AS1Q8N2C9 162 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 FBXW8Q8N3Y1 598 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 PSMG2Q969U7 264 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 IMP4Q96G21 291 aaKnown RBP9.03□□□□□ -0.96
SYNE1-217ENST00000466159 MARK4Q96L34 752 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 B3GALT6Q96L58 329 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 OLFM1Q99784 485 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 RTKNQ9BST9 563 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 MRPL46Q9H2W6 279 aaKnown RBP9.03□□□□□ -0.96
SYNE1-217ENST00000466159 PRDM5Q9NQX1 630 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-217ENST00000466159 RGS18Q9NS28 235 aa9.03□□□□□ -0.96
SYNE1-217ENST00000466159 GJB3O75712 270 aa9.02□□□□□ -0.96
SYNE1-217ENST00000466159 MMP2P08253 660 aa9.02□□□□□ -0.96
SYNE1-217ENST00000466159 HMBSP08397 361 aa9.02□□□□□ -0.96
SYNE1-217ENST00000466159 POLD2P49005 469 aa9.02□□□□□ -0.96
SYNE1-217ENST00000466159 SERPINH1P50454 418 aaKnown RBP9.02□□□□□ -0.96
SYNE1-217ENST00000466159 NUDT2P50583 147 aa9.02□□□□□ -0.96
SYNE1-217ENST00000466159 RENBPP51606 427 aa9.02□□□□□ -0.96
SYNE1-217ENST00000466159 PRKAA2P54646 552 aa9.02□□□□□ -0.96
SYNE1-217ENST00000466159 SLC12A2P55011 1212 aa9.02□□□□□ -0.96
SYNE1-217ENST00000466159 MRPS35P82673 323 aaKnown RBP9.02□□□□□ -0.96
SYNE1-217ENST00000466159 LRRC36Q1X8D7 754 aa9.02□□□□□ -0.96
SYNE1-217ENST00000466159 MARC1Q5VT66 337 aa9.02□□□□□ -0.96
SYNE1-217ENST00000466159 IRGCQ6NXR0 463 aa9.02□□□□□ -0.96
SYNE1-217ENST00000466159 TMEM154Q6P9G4 183 aa9.02□□□□□ -0.96
SYNE1-217ENST00000466159 AAGABQ6PD74 315 aa9.02□□□□□ -0.96
SYNE1-217ENST00000466159 LDB1Q86U70 411 aaPredicted RBP9.02□□□□□ -0.96
SYNE1-217ENST00000466159 CIR1Q86X95 450 aaPredicted RBP9.02□□□□□ -0.96
SYNE1-217ENST00000466159 MIB1Q86YT6 1006 aa9.02□□□□□ -0.96
SYNE1-217ENST00000466159 LRRC49Q8IUZ0 686 aa9.02□□□□□ -0.96
SYNE1-217ENST00000466159 DCP1BQ8IZD4 617 aaKnown RBP9.02□□□□□ -0.96
SYNE1-217ENST00000466159 LINC01599Q8WXQ3 324 aa9.02□□□□□ -0.96
SYNE1-217ENST00000466159 IGSF8Q969P0 613 aa9.02□□□□□ -0.96
SYNE1-217ENST00000466159 CATSPER2Q96P56 530 aa9.02□□□□□ -0.96
SYNE1-217ENST00000466159 PPP1R2P1Q96PQ5 205 aa9.02□□□□□ -0.96
SYNE1-217ENST00000466159 ZYG11BQ9C0D3 744 aa9.02□□□□□ -0.96
SYNE1-217ENST00000466159 POMKQ9H5K3 350 aa9.02□□□□□ -0.96
SYNE1-217ENST00000466159 IGSF5Q9NSI5 407 aa9.02□□□□□ -0.96
SYNE1-217ENST00000466159 VWA8A3KMH1 1905 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 HEATR9A2RTY3 570 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 INPPL1O15357 1258 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 CA12O43570 354 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 BUD23O43709 281 aaKnown RBP9.02□□□□□ -0.97
SYNE1-217ENST00000466159 LINGO3P0C6S8 592 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 CKBP12277 381 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 HNRNPLP14866 589 aaKnown RBP eCLIP9.02□□□□□ -0.97
SYNE1-217ENST00000466159 RHOQP17081 205 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 KCNA5P22460 613 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 ETFBP38117 255 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 NDST2P52849 883 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 MTTPP55157 894 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 ARPP19P56211 112 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 POU4F1Q01851 419 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 NSUN2Q08J23 767 aaKnown RBP eCLIP9.02□□□□□ -0.97
SYNE1-217ENST00000466159 ASPHQ12797 758 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 MSLNQ13421 630 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-217ENST00000466159 EML3Q32P44 896 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 VARS2Q5ST30 1063 aaKnown RBP9.02□□□□□ -0.97
SYNE1-217ENST00000466159 RAP1GAP2Q684P5 730 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 FBXL22Q6P050 247 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 MSANTD2Q6P1R3 559 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 TRIM67Q6ZTA4 783 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 ACAD11Q709F0 780 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 SLC24A5Q71RS6 500 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 RPS27LQ71UM5 84 aaKnown RBP9.02□□□□□ -0.97
SYNE1-217ENST00000466159 PTAR1Q7Z6K3 402 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-217ENST00000466159 KDM1BQ8NB78 822 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 OR13J1Q8NGT2 312 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 CNDP1Q96KN2 507 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 MRPL57Q9BQC6 102 aaKnown RBP9.02□□□□□ -0.97
SYNE1-217ENST00000466159 PRKD2Q9BZL6 878 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 FBXO44Q9H4M3 255 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 SUDS3Q9H7L9 328 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-217ENST00000466159 SP110Q9HB58 689 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 ARNT2Q9HBZ2 717 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 CYP4F12Q9HCS2 524 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 ATP13A1Q9HD20 1204 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 CDYLQ9Y232 598 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 SLC27A5Q9Y2P5 690 aa9.02□□□□□ -0.97
SYNE1-217ENST00000466159 A0A087X1B8 175 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 RGSL1A5PLK6 1076 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 TMEM88BA6NKF7 163 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 TADA2AO75478 443 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 THRAP10827 490 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 SLC2A3P11169 496 aa9.01□□□□□ -0.97
SYNE1-217ENST00000466159 DNAJB1P25685 340 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms