RNA–Protein interactions for RNA: ENST00000464454.1

CLK1-208, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 484 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-208ENST00000464454 TTC36A6NLP5 189 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 RNASEH2AO75792 299 aaKnown RBP4.34□□□□□ -1.71
CLK1-208ENST00000464454 CCNDBP1O95273 360 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 SPARCP09486 303 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 ENO3P13929 434 aaPredicted RBP4.34□□□□□ -1.71
CLK1-208ENST00000464454 SLC2A4P14672 509 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 CHRNB2P17787 502 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 POU1F1P28069 291 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 CPOXP36551 454 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 GPR12P47775 334 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 RPL7AP62424 266 aaKnown RBP4.34□□□□□ -1.71
CLK1-208ENST00000464454 FOXD4Q12950 439 aaPredicted RBP4.34□□□□□ -1.71
CLK1-208ENST00000464454 HNRNPA0Q13151 305 aaKnown RBP4.34□□□□□ -1.71
CLK1-208ENST00000464454 ERV3-1Q14264 604 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 TAF11Q15544 211 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 GSTA3Q16772 222 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 ME3Q16798 604 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 WASHC2DQ5SRD0 308 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 SERTAD4-AS1Q5TG53 156 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 ATG9BQ674R7 924 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 HEPHL1Q6MZM0 1159 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 C9orf47Q6ZRZ4 202 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 SLC16A12Q6ZSM3 486 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 HORMAD2Q8N7B1 307 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 OR4N2Q8NGD1 307 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 INPP5DQ92835 1189 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 NAF1Q96HR8 494 aaKnown RBP4.34□□□□□ -1.71
CLK1-208ENST00000464454 TIGD1Q96MW7 591 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 TREX2Q9BQ50 279 aaPredicted RBP4.34□□□□□ -1.71
CLK1-208ENST00000464454 SF3B5Q9BWJ5 86 aaKnown RBP4.34□□□□□ -1.71
CLK1-208ENST00000464454 EBF3Q9H4W6 596 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 KLHL31Q9H511 634 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 CATSPERBQ9H7T0 1116 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 SNTG1Q9NSN8 517 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 C20orf141Q9NUB4 165 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 NCKIPSDQ9NZQ3 722 aa4.34□□□□□ -1.71
CLK1-208ENST00000464454 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.34□□□□□ -1.71
CLK1-208ENST00000464454 ADGRF5Q8IZF2 1346 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 A0A096LPK6 155 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 ANKRD18BA2A2Z9 1011 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 DDTLA6NHG4 134 aaPredicted RBP4.33□□□□□ -1.72
CLK1-208ENST00000464454 STMND1H3BQB6 276 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 TIPRLO75663 272 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 SEC14L2O76054 403 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 NTN1O95631 604 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 SCGB1D1O95968 90 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 CYP1A2P05177 515 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 SNHG28P0DPA3 235 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 IRF1P10914 325 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 HOXB2P14652 356 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 ARSBP15848 533 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 PTPN2P17706 415 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 BDNFP23560 247 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 RFC1P35251 1148 aaPredicted RBP4.33□□□□□ -1.72
CLK1-208ENST00000464454 ARL3P36405 182 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 AVPR1AP37288 418 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 RFX2P48378 723 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 CENPAP49450 140 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 RARSP54136 660 aaKnown RBP4.33□□□□□ -1.72
CLK1-208ENST00000464454 ZP1P60852 638 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 ARF3P61204 181 aaPredicted RBP4.33□□□□□ -1.72
CLK1-208ENST00000464454 RPS3AP61247 264 aaKnown RBP4.33□□□□□ -1.72
CLK1-208ENST00000464454 ARF1P84077 181 aaKnown RBP4.33□□□□□ -1.72
CLK1-208ENST00000464454 ROR2Q01974 943 aaKnown RBP4.33□□□□□ -1.72
CLK1-208ENST00000464454 MAMLD1Q13495 774 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 PKP1Q13835 747 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 EIF4A2Q14240 407 aaKnown RBP4.33□□□□□ -1.72
CLK1-208ENST00000464454 GPR18Q14330 331 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 VEPH1Q14D04 833 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 SLC45A4Q5BKX6 768 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 OTUD1Q5VV17 481 aaPredicted RBP4.33□□□□□ -1.72
CLK1-208ENST00000464454 ITPRIPL1Q6GPH6 555 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 CPLX2Q6PUV4 134 aaKnown RBP4.33□□□□□ -1.72
CLK1-208ENST00000464454 FAM83HQ6ZRV2 1179 aaPredicted RBP4.33□□□□□ -1.72
CLK1-208ENST00000464454 SLC46A3Q7Z3Q1 461 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 GPAT4Q86UL3 456 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 TRIM74Q86UV6 250 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 TRIM73Q86UV7 250 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 CNTROBQ8N137 903 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 ADSSL1Q8N142 457 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 SLC35F5Q8WV83 523 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 ATOH1Q92858 354 aaPredicted RBP4.33□□□□□ -1.72
CLK1-208ENST00000464454 BARD1Q99728 777 aaKnown RBP4.33□□□□□ -1.72
CLK1-208ENST00000464454 H2AFJQ9BTM1 129 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 HEMGNQ9BXL5 484 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 PRKRIP1Q9H875 184 aaPredicted RBP4.33□□□□□ -1.72
CLK1-208ENST00000464454 BRF2Q9HAW0 419 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 HIF1ANQ9NWT6 349 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 PLEKHB1Q9UF11 243 aaPredicted RBP4.33□□□□□ -1.72
CLK1-208ENST00000464454 PSAT1Q9Y617 370 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 SCINQ9Y6U3 715 aa4.33□□□□□ -1.72
CLK1-208ENST00000464454 FAM90A8PA6NJQ4 464 aa4.32□□□□□ -1.72
CLK1-208ENST00000464454 LRRC53A6NM62 1247 aa4.32□□□□□ -1.72
CLK1-208ENST00000464454 MS4A18H0YCH9 400 aa4.32□□□□□ -1.72
CLK1-208ENST00000464454 TNFRSF13BO14836 293 aaPredicted RBP4.32□□□□□ -1.72
CLK1-208ENST00000464454 TGFB1I1O43294 461 aa4.32□□□□□ -1.72
CLK1-208ENST00000464454 SLC25A17O43808 307 aa4.32□□□□□ -1.72
CLK1-208ENST00000464454 HEXAP06865 529 aa4.32□□□□□ -1.72
CLK1-208ENST00000464454 FAM90A13PP0C7W8 464 aa4.32□□□□□ -1.72
CLK1-208ENST00000464454 FAM90A24PP0C7X0 464 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms