RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 ASCL3Q9NQ33 180 aa16.31■□□□□ 0.2
COL7A1-204ENST00000462475 MBNL1Q9NR56 388 aaKnown RBP16.31■□□□□ 0.2
COL7A1-204ENST00000462475 ADAM22Q9P0K1 906 aa16.31■□□□□ 0.2
COL7A1-204ENST00000462475 SPASTQ9UBP0 616 aa16.31■□□□□ 0.2
COL7A1-204ENST00000462475 SALL4Q9UJQ4 1053 aa16.31■□□□□ 0.2
COL7A1-204ENST00000462475 SIK3Q9Y2K2 1263 aa16.31■□□□□ 0.2
COL7A1-204ENST00000462475 TEX51A0A1B0GUA7 166 aa16.3■□□□□ 0.2
COL7A1-204ENST00000462475 ZSCAN5CA6NGD5 496 aaPredicted RBP16.3■□□□□ 0.2
COL7A1-204ENST00000462475 TPP1O14773 563 aa16.3■□□□□ 0.2
COL7A1-204ENST00000462475 MUSKO15146 869 aa16.3■□□□□ 0.2
COL7A1-204ENST00000462475 CCP110O43303 1012 aa16.3■□□□□ 0.2
COL7A1-204ENST00000462475 IGSF6O95976 241 aa16.3■□□□□ 0.2
COL7A1-204ENST00000462475 EPHB2P29323 1055 aa16.3■□□□□ 0.2
COL7A1-204ENST00000462475 STAT1P42224 750 aa16.3■□□□□ 0.2
COL7A1-204ENST00000462475 C1QBPQ07021 282 aaKnown RBP16.3■□□□□ 0.2
COL7A1-204ENST00000462475 C19orf57Q0VDD7 668 aa16.3■□□□□ 0.2
COL7A1-204ENST00000462475 NR0B2Q15466 257 aa16.3■□□□□ 0.2
COL7A1-204ENST00000462475 PRRT3Q5FWE3 981 aa16.3■□□□□ 0.2
COL7A1-204ENST00000462475 C3orf38Q5JPI3 329 aa16.3■□□□□ 0.2
COL7A1-204ENST00000462475 PERM1Q5SV97 790 aa16.3■□□□□ 0.2
COL7A1-204ENST00000462475 PCSK4Q6UW60 755 aa16.3■□□□□ 0.2
COL7A1-204ENST00000462475 SLFN11Q7Z7L1 901 aa16.3■□□□□ 0.2
COL7A1-204ENST00000462475 PHF13Q86YI8 300 aaPredicted RBP16.3■□□□□ 0.2
COL7A1-204ENST00000462475 SLC35F3Q8IY50 421 aa16.3■□□□□ 0.2
COL7A1-204ENST00000462475 LSMEM2Q8N112 164 aa16.3■□□□□ 0.2
COL7A1-204ENST00000462475 TP53I13Q8NBR0 393 aaPredicted RBP16.3■□□□□ 0.2
COL7A1-204ENST00000462475 C3orf20Q8ND61 904 aa16.3■□□□□ 0.2
COL7A1-204ENST00000462475 BTN2A2Q8WVV5 523 aa16.3■□□□□ 0.2
COL7A1-204ENST00000462475 HMCESQ96FZ2 354 aa16.3■□□□□ 0.2
COL7A1-204ENST00000462475 ATXN7L3BQ96GX2 97 aa16.3■□□□□ 0.2
COL7A1-204ENST00000462475 EPAS1Q99814 870 aa16.3■□□□□ 0.2
COL7A1-204ENST00000462475 WRAP53Q9BUR4 548 aaKnown RBP16.3■□□□□ 0.2
COL7A1-204ENST00000462475 BOCQ9BWV1 1114 aa16.3■□□□□ 0.2
COL7A1-204ENST00000462475 TTYH3Q9C0H2 523 aa16.3■□□□□ 0.2
COL7A1-204ENST00000462475 NCKIPSDQ9NZQ3 722 aa16.3■□□□□ 0.2
COL7A1-204ENST00000462475 SATB2Q9UPW6 733 aa16.3■□□□□ 0.2
COL7A1-204ENST00000462475 COL27A1Q8IZC6 1860 aaPredicted RBP16.3■□□□□ 0.2
COL7A1-204ENST00000462475 PMS2P1A4D2B8 440 aa16.29■□□□□ 0.2
COL7A1-204ENST00000462475 RASA4BC9J798 803 aa16.29■□□□□ 0.2
COL7A1-204ENST00000462475 INSIG1O15503 277 aa16.29■□□□□ 0.2
COL7A1-204ENST00000462475 RASA4O43374 803 aa16.29■□□□□ 0.2
COL7A1-204ENST00000462475 TM7SF2O76062 418 aa16.29■□□□□ 0.2
COL7A1-204ENST00000462475 CELA2BP08218 269 aaPredicted RBP16.29■□□□□ 0.2
COL7A1-204ENST00000462475 TIMP2P16035 220 aa16.29■□□□□ 0.2
COL7A1-204ENST00000462475 ADKP55263 362 aaKnown RBP16.29■□□□□ 0.2
COL7A1-204ENST00000462475 ERVPABLB-1P60509 514 aa16.29■□□□□ 0.2
COL7A1-204ENST00000462475 RHOAP61586 193 aa16.29■□□□□ 0.2
COL7A1-204ENST00000462475 PTK2BQ14289 1009 aa16.29■□□□□ 0.2
COL7A1-204ENST00000462475 IRF4Q15306 451 aa16.29■□□□□ 0.2
COL7A1-204ENST00000462475 SYCP1Q15431 976 aa16.29■□□□□ 0.2
COL7A1-204ENST00000462475 KLHL40Q2TBA0 621 aa16.29■□□□□ 0.2
COL7A1-204ENST00000462475 EFHC2Q5JST6 749 aa16.29■□□□□ 0.2
COL7A1-204ENST00000462475 FKBP15Q5T1M5 1219 aa16.29■□□□□ 0.2
COL7A1-204ENST00000462475 MACC1Q6ZN28 852 aa16.29■□□□□ 0.2
COL7A1-204ENST00000462475 MON1BQ7L1V2 547 aa16.29■□□□□ 0.2
COL7A1-204ENST00000462475 CXorf40AQ8TE69 158 aa16.29■□□□□ 0.2
COL7A1-204ENST00000462475 VCPIP1Q96JH7 1222 aa16.29■□□□□ 0.2
COL7A1-204ENST00000462475 EXOC2Q96KP1 924 aa16.29■□□□□ 0.2
COL7A1-204ENST00000462475 CLPBQ9H078 707 aa16.29■□□□□ 0.2
COL7A1-204ENST00000462475 CPNE5Q9HCH3 593 aa16.29■□□□□ 0.2
COL7A1-204ENST00000462475 DKK3Q9UBP4 350 aa16.29■□□□□ 0.2
COL7A1-204ENST00000462475 LHX3Q9UBR4 397 aa16.29■□□□□ 0.2
COL7A1-204ENST00000462475 ENTPD2Q9Y5L3 495 aa16.29■□□□□ 0.2
COL7A1-204ENST00000462475 TCRBV5S1A1TA0A578 114 aa16.28■□□□□ 0.2
COL7A1-204ENST00000462475 SIGLEC16A6NMB1 481 aa16.28■□□□□ 0.2
COL7A1-204ENST00000462475 LMO7DNF2Z398 122 aa16.28■□□□□ 0.2
COL7A1-204ENST00000462475 CREB3O43889 395 aa16.28■□□□□ 0.2
COL7A1-204ENST00000462475 PIGNO95427 931 aa16.28■□□□□ 0.2
COL7A1-204ENST00000462475 CALB1P05937 261 aa16.28■□□□□ 0.2
COL7A1-204ENST00000462475 TSHRP16473 764 aa16.28■□□□□ 0.2
COL7A1-204ENST00000462475 EIF4A3P38919 411 aaKnown RBP16.28■□□□□ 0.2
COL7A1-204ENST00000462475 YPEL5P62699 121 aa16.28■□□□□ 0.2
COL7A1-204ENST00000462475 RAD51Q06609 339 aa16.28■□□□□ 0.2
COL7A1-204ENST00000462475 INO80DQ53TQ3 878 aaPredicted RBP16.28■□□□□ 0.2
COL7A1-204ENST00000462475 C6orf132Q5T0Z8 1188 aa16.28■□□□□ 0.2
COL7A1-204ENST00000462475 SCYL2Q6P3W7 929 aa16.28■□□□□ 0.2
COL7A1-204ENST00000462475 RBM44Q6ZP01 1051 aaKnown RBP16.28■□□□□ 0.2
COL7A1-204ENST00000462475 LSM14AQ8ND56 463 aaKnown RBP16.28■□□□□ 0.2
COL7A1-204ENST00000462475 KCNE4Q8WWG9 221 aa16.28■□□□□ 0.2
COL7A1-204ENST00000462475 CASKIN2Q8WXE0 1202 aa16.28■□□□□ 0.2
COL7A1-204ENST00000462475 TBATAQ96M53 351 aa16.28■□□□□ 0.2
COL7A1-204ENST00000462475 MCEEQ96PE7 176 aa16.28■□□□□ 0.2
COL7A1-204ENST00000462475 SLC13A1Q9BZW2 595 aa16.28■□□□□ 0.2
COL7A1-204ENST00000462475 THSD1Q9NS62 852 aa16.28■□□□□ 0.2
COL7A1-204ENST00000462475 SEPT11Q9NVA2 429 aaKnown RBP16.28■□□□□ 0.2
COL7A1-204ENST00000462475 FANCLQ9NW38 375 aa16.28■□□□□ 0.2
COL7A1-204ENST00000462475 COQ6Q9Y2Z9 468 aa16.28■□□□□ 0.2
COL7A1-204ENST00000462475 MFHAS1Q9Y4C4 1052 aa16.28■□□□□ 0.2
COL7A1-204ENST00000462475 DAAM1Q9Y4D1 1078 aa16.28■□□□□ 0.2
COL7A1-204ENST00000462475 SHROOM3Q8TF72 1996 aa16.27■□□□□ 0.2
COL7A1-204ENST00000462475 RIOK3O14730 519 aaKnown RBP16.27■□□□□ 0.2
COL7A1-204ENST00000462475 YY2O15391 372 aa16.27■□□□□ 0.2
COL7A1-204ENST00000462475 ZIC2O95409 532 aaPredicted RBP16.27■□□□□ 0.2
COL7A1-204ENST00000462475 TPM2P07951 284 aa16.27■□□□□ 0.2
COL7A1-204ENST00000462475 ANXA6P08133 673 aa16.27■□□□□ 0.2
COL7A1-204ENST00000462475 ZNF143P52747 638 aaPredicted RBP16.27■□□□□ 0.2
COL7A1-204ENST00000462475 PDX1P52945 283 aa16.27■□□□□ 0.2
COL7A1-204ENST00000462475 COPB1P53618 953 aaKnown RBP16.27■□□□□ 0.2
COL7A1-204ENST00000462475 TMPRSS3P57727 454 aa16.27■□□□□ 0.2
COL7A1-204ENST00000462475 YBEYP58557 167 aaPredicted RBP16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms