RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 PIGNO95427 931 aa21.47■■□□□ 1.03
HMGB3-205ENST00000455596 XPAP23025 273 aaPredicted RBP21.47■■□□□ 1.03
HMGB3-205ENST00000455596 EIF4A3P38919 411 aaKnown RBP21.47■■□□□ 1.03
HMGB3-205ENST00000455596 IL10RBQ08334 325 aa21.47■■□□□ 1.03
HMGB3-205ENST00000455596 RFTN1Q14699 578 aaPredicted RBP21.47■■□□□ 1.03
HMGB3-205ENST00000455596 LRRC73Q5JTD7 316 aa21.47■■□□□ 1.03
HMGB3-205ENST00000455596 KYAT3Q6YP21 454 aaKnown RBP21.47■■□□□ 1.03
HMGB3-205ENST00000455596 Q6ZSR6 202 aa21.47■■□□□ 1.03
HMGB3-205ENST00000455596 KANSL1Q7Z3B3 1105 aa21.47■■□□□ 1.03
HMGB3-205ENST00000455596 POLNQ7Z5Q5 900 aa21.47■■□□□ 1.03
HMGB3-205ENST00000455596 OR8K1Q8NGG5 319 aa21.47■■□□□ 1.03
HMGB3-205ENST00000455596 HCAR2Q8TDS4 363 aa21.47■■□□□ 1.03
HMGB3-205ENST00000455596 CXorf40AQ8TE69 158 aa21.47■■□□□ 1.03
HMGB3-205ENST00000455596 BMFQ96LC9 184 aa21.47■■□□□ 1.03
HMGB3-205ENST00000455596 TUBGCP5Q96RT8 1024 aa21.47■■□□□ 1.03
HMGB3-205ENST00000455596 CINPQ9BW66 212 aaPredicted RBP21.47■■□□□ 1.03
HMGB3-205ENST00000455596 KLHL11Q9NVR0 708 aa21.47■■□□□ 1.03
HMGB3-205ENST00000455596 NENFQ9UMX5 172 aa21.47■■□□□ 1.03
HMGB3-205ENST00000455596 MAP1BP46821 2468 aaKnown RBP21.47■■□□□ 1.03
HMGB3-205ENST00000455596 ARID1BQ8NFD5 2236 aaPredicted RBP21.46■■□□□ 1.03
HMGB3-205ENST00000455596 TMEM8BA6NDV4 472 aa21.46■■□□□ 1.03
HMGB3-205ENST00000455596 POM121BA6NF01 834 aa21.46■■□□□ 1.03
HMGB3-205ENST00000455596 ENC1O14682 589 aa21.46■■□□□ 1.03
HMGB3-205ENST00000455596 FPGTO14772 594 aa21.46■■□□□ 1.03
HMGB3-205ENST00000455596 RAD51BO15315 384 aa21.46■■□□□ 1.03
HMGB3-205ENST00000455596 SDC3O75056 442 aa21.46■■□□□ 1.03
HMGB3-205ENST00000455596 TPM1P09493 284 aa21.46■■□□□ 1.03
HMGB3-205ENST00000455596 TIMP2P16035 220 aa21.46■■□□□ 1.03
HMGB3-205ENST00000455596 AMPD1P23109 780 aa21.46■■□□□ 1.03
HMGB3-205ENST00000455596 CSNK1DP48730 415 aa21.46■■□□□ 1.03
HMGB3-205ENST00000455596 SUOXP51687 545 aa21.46■■□□□ 1.03
HMGB3-205ENST00000455596 SLC25A11Q02978 314 aaKnown RBP21.46■■□□□ 1.03
HMGB3-205ENST00000455596 TXNRD3NBQ6F5E7 133 aa21.46■■□□□ 1.03
HMGB3-205ENST00000455596 TMCO3Q6UWJ1 677 aa21.46■■□□□ 1.03
HMGB3-205ENST00000455596 ARHGAP36Q6ZRI8 547 aa21.46■■□□□ 1.03
HMGB3-205ENST00000455596 SLC22A18ASQ8N1D0 253 aa21.46■■□□□ 1.03
HMGB3-205ENST00000455596 TSEN2Q8NCE0 465 aaKnown RBP21.46■■□□□ 1.03
HMGB3-205ENST00000455596 DENND6BQ8NEG7 585 aa21.46■■□□□ 1.03
HMGB3-205ENST00000455596 ZNF564Q8TBZ8 553 aaPredicted RBP21.46■■□□□ 1.03
HMGB3-205ENST00000455596 ZNF641Q96N77 438 aaPredicted RBP21.46■■□□□ 1.03
HMGB3-205ENST00000455596 KLF6Q99612 283 aaPredicted RBP21.46■■□□□ 1.03
HMGB3-205ENST00000455596 DEF6Q9H4E7 631 aa21.46■■□□□ 1.03
HMGB3-205ENST00000455596 SUV39H2Q9H5I1 410 aa21.46■■□□□ 1.03
HMGB3-205ENST00000455596 ZNHIT6Q9NWK9 470 aaKnown RBP21.46■■□□□ 1.03
HMGB3-205ENST00000455596 IPO11Q9UI26 975 aaKnown RBP21.46■■□□□ 1.03
HMGB3-205ENST00000455596 TM7SF2O76062 418 aa21.45■■□□□ 1.02
HMGB3-205ENST00000455596 SSR1P43307 286 aaKnown RBP21.45■■□□□ 1.02
HMGB3-205ENST00000455596 RABIFP47224 123 aa21.45■■□□□ 1.02
HMGB3-205ENST00000455596 ELP6Q0PNE2 266 aa21.45■■□□□ 1.02
HMGB3-205ENST00000455596 SLC18A3Q16572 532 aa21.45■■□□□ 1.02
HMGB3-205ENST00000455596 HADHQ16836 314 aaKnown RBP21.45■■□□□ 1.02
HMGB3-205ENST00000455596 CCDC157Q569K6 752 aa21.45■■□□□ 1.02
HMGB3-205ENST00000455596 CFAP58Q5T655 872 aa21.45■■□□□ 1.02
HMGB3-205ENST00000455596 SRLQ86TD4 932 aa21.45■■□□□ 1.02
HMGB3-205ENST00000455596 RNF214Q8ND24 703 aa21.45■■□□□ 1.02
HMGB3-205ENST00000455596 IFT43Q96FT9 208 aa21.45■■□□□ 1.02
HMGB3-205ENST00000455596 CSPG4P5Q96PW8 444 aa21.45■■□□□ 1.02
HMGB3-205ENST00000455596 DNAJC7Q99615 494 aa21.45■■□□□ 1.02
HMGB3-205ENST00000455596 PCDH18Q9HCL0 1135 aa21.45■■□□□ 1.02
HMGB3-205ENST00000455596 GPR27Q9NS67 375 aa21.45■■□□□ 1.02
HMGB3-205ENST00000455596 TSPAN11A1L157 253 aa21.44■■□□□ 1.02
HMGB3-205ENST00000455596 MMP20O60882 483 aa21.44■■□□□ 1.02
HMGB3-205ENST00000455596 H2AFZP0C0S5 128 aa21.44■■□□□ 1.02
HMGB3-205ENST00000455596 ITIH2P19823 946 aa21.44■■□□□ 1.02
HMGB3-205ENST00000455596 SERPINA4P29622 427 aa21.44■■□□□ 1.02
HMGB3-205ENST00000455596 RGRP47804 291 aa21.44■■□□□ 1.02
HMGB3-205ENST00000455596 KRT81Q14533 505 aa21.44■■□□□ 1.02
HMGB3-205ENST00000455596 TSR1Q2NL82 804 aaKnown RBP21.44■■□□□ 1.02
HMGB3-205ENST00000455596 H2AFVQ71UI9 128 aa21.44■■□□□ 1.02
HMGB3-205ENST00000455596 TMPRSS7Q7RTY8 843 aa21.44■■□□□ 1.02
HMGB3-205ENST00000455596 VSTM4Q8IW00 320 aa21.44■■□□□ 1.02
HMGB3-205ENST00000455596 TP53INP2Q8IXH6 220 aa21.44■■□□□ 1.02
HMGB3-205ENST00000455596 GALNT15Q8N3T1 639 aa21.44■■□□□ 1.02
HMGB3-205ENST00000455596 KDF1Q8NAX2 398 aaPredicted RBP21.44■■□□□ 1.02
HMGB3-205ENST00000455596 CTNNBL1Q8WYA6 563 aaPredicted RBP21.44■■□□□ 1.02
HMGB3-205ENST00000455596 ZNF599Q96NL3 588 aa21.44■■□□□ 1.02
HMGB3-205ENST00000455596 C1QTNF7Q9BXJ2 289 aa21.44■■□□□ 1.02
HMGB3-205ENST00000455596 ATP13A3Q9H7F0 1226 aa21.44■■□□□ 1.02
HMGB3-205ENST00000455596 CTTNBP2NLQ9P2B4 639 aa21.44■■□□□ 1.02
HMGB3-205ENST00000455596 UVRAGQ9P2Y5 699 aa21.44■■□□□ 1.02
HMGB3-205ENST00000455596 PCDHGA1Q9Y5H4 931 aa21.44■■□□□ 1.02
HMGB3-205ENST00000455596 MYLKQ15746 1914 aa21.43■■□□□ 1.02
HMGB3-205ENST00000455596 SSU72P8A0A1W2PR75 194 aa21.43■■□□□ 1.02
HMGB3-205ENST00000455596 BUB1BO60566 1050 aaPredicted RBP21.43■■□□□ 1.02
HMGB3-205ENST00000455596 DGKAP23743 735 aa21.43■■□□□ 1.02
HMGB3-205ENST00000455596 SERPINB6P35237 376 aa21.43■■□□□ 1.02
HMGB3-205ENST00000455596 RENBPP51606 427 aa21.43■■□□□ 1.02
HMGB3-205ENST00000455596 CDH6P55285 790 aa21.43■■□□□ 1.02
HMGB3-205ENST00000455596 NSUN2Q08J23 767 aaKnown RBP eCLIP21.43■■□□□ 1.02
HMGB3-205ENST00000455596 LBRQ14739 615 aaKnown RBP21.43■■□□□ 1.02
HMGB3-205ENST00000455596 UGP2Q16851 508 aa21.43■■□□□ 1.02
HMGB3-205ENST00000455596 TMEM52BQ4KMG9 183 aa21.43■■□□□ 1.02
HMGB3-205ENST00000455596 TMCO4Q5TGY1 634 aa21.43■■□□□ 1.02
HMGB3-205ENST00000455596 BRAT1Q6PJG6 821 aa21.43■■□□□ 1.02
HMGB3-205ENST00000455596 CCNI2Q6ZMN8 369 aaPredicted RBP21.43■■□□□ 1.02
HMGB3-205ENST00000455596 CAMK1DQ8IU85 385 aa21.43■■□□□ 1.02
HMGB3-205ENST00000455596 CENPTQ96BT3 561 aa21.43■■□□□ 1.02
HMGB3-205ENST00000455596 WRAP53Q9BUR4 548 aaKnown RBP21.43■■□□□ 1.02
HMGB3-205ENST00000455596 ABHD10Q9NUJ1 306 aa21.43■■□□□ 1.02
HMGB3-205ENST00000455596 ETNK2Q9NVF9 386 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms