RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 LIMD1Q9UGP4 676 aa17.31■□□□□ 0.36
CCDC28B-202ENST00000421922 ARIH1Q9Y4X5 557 aaPredicted RBP17.31■□□□□ 0.36
CCDC28B-202ENST00000421922 RAI2Q9Y5P3 530 aa17.31■□□□□ 0.36
CCDC28B-202ENST00000421922 GOLGA6L10A6NI86 522 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 TNFRSF10AO00220 468 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 ATP9BO43861 1147 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 IVLP07476 585 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 ABHD2P08910 425 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 PGAM1P18669 254 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 SERPINA4P29622 427 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 ADRA1AP35348 466 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 OPRD1P41143 372 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 CSNK1DP48730 415 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 EIF3BP55884 814 aaKnown RBP17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 BCL2L1Q07817 233 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 SEPT6Q14141 434 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 SLC29A2Q14542 456 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 GAB4Q2WGN9 574 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 NCEH1Q6PIU2 408 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 SUGP1Q8IWZ8 645 aaKnown RBP17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 UHMK1Q8TAS1 419 aaKnown RBP17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 RMDN1Q96DB5 314 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 SYBUQ9NX95 663 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 EVLQ9UI08 416 aaPredicted RBP17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 TEX264Q9Y6I9 313 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 MAP2K7O14733 419 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 GJB3O75712 270 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 NDST3O95803 873 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 GSTA2P09210 222 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 GRIA2P42262 883 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 EPHB1P54762 984 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 GRM3Q14832 879 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 SLC1A5Q15758 541 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 CARD16Q5EG05 197 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 TMEM215Q68D42 235 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 LRIG3Q6UXM1 1119 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 SORCS1Q8WY21 1168 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 TADA1Q96BN2 335 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 SIGLEC10Q96LC7 697 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 ZIM3Q96PE6 472 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 TDRD1Q9BXT4 1180 aaKnown RBP17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 ZDHHC6Q9H6R6 413 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 KCNK12Q9HB15 430 aa17.3■□□□□ 0.36
CCDC28B-202ENST00000421922 REV3LO60673 3130 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 MAGEB16A2A368 324 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 KAT7O95251 611 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 EPOP01588 193 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 POLBP06746 335 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 NUDT17P0C025 328 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 TPH1P17752 444 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 STX2P32856 288 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 CRADDP78560 199 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 CBLBQ13191 982 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 LAMB3Q13751 1172 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 GALNT3Q14435 633 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 HSP90B2PQ58FF3 399 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 SIRPB2Q5JXA9 342 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 DGKKQ5KSL6 1271 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 ARMC12Q5T9G4 340 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 RANBP10Q6VN20 620 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 C3orf62Q6ZUJ4 267 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 Q6ZVU0 165 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 CROCCP2Q86T23 111 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 LPCAT1Q8NF37 534 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 OR6K2Q8NGY2 324 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 DNASE1L2Q92874 299 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 MYO19Q96H55 970 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 LRRC4CQ9HCJ2 640 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 SLCO3A1Q9UIG8 710 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 CHKBQ9Y259 395 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 PCDHGC4Q9Y5F7 938 aa17.29■□□□□ 0.36
CCDC28B-202ENST00000421922 LOC285095A0A1B0GVY8 99 aa17.28■□□□□ 0.36
CCDC28B-202ENST00000421922 ARNTLO00327 626 aa17.28■□□□□ 0.36
CCDC28B-202ENST00000421922 OPA1O60313 960 aa17.28■□□□□ 0.36
CCDC28B-202ENST00000421922 SOCS5O75159 536 aa17.28■□□□□ 0.36
CCDC28B-202ENST00000421922 SASH3O75995 380 aa17.28■□□□□ 0.36
CCDC28B-202ENST00000421922 POP4O95707 220 aaKnown RBP17.28■□□□□ 0.36
CCDC28B-202ENST00000421922 CHRNA4P43681 627 aa17.28■□□□□ 0.36
CCDC28B-202ENST00000421922 VASPP50552 380 aaPredicted RBP17.28■□□□□ 0.36
CCDC28B-202ENST00000421922 CCNHP51946 323 aaPredicted RBP17.28■□□□□ 0.36
CCDC28B-202ENST00000421922 PFKPQ01813 784 aa17.28■□□□□ 0.36
CCDC28B-202ENST00000421922 POU6F1Q14863 301 aa17.28■□□□□ 0.36
CCDC28B-202ENST00000421922 MYLK3Q32MK0 819 aa17.28■□□□□ 0.36
CCDC28B-202ENST00000421922 PCID2Q5JVF3 399 aa17.28■□□□□ 0.36
CCDC28B-202ENST00000421922 CERCAMQ5T4B2 595 aa17.28■□□□□ 0.36
CCDC28B-202ENST00000421922 MPP5Q8N3R9 675 aa17.28■□□□□ 0.36
CCDC28B-202ENST00000421922 KDM1BQ8NB78 822 aa17.28■□□□□ 0.36
CCDC28B-202ENST00000421922 PTCD2Q8WV60 388 aaKnown RBP17.28■□□□□ 0.36
CCDC28B-202ENST00000421922 ZNF669Q96BR6 464 aaPredicted RBP17.28■□□□□ 0.36
CCDC28B-202ENST00000421922 MRGPRX3Q96LB0 322 aa17.28■□□□□ 0.36
CCDC28B-202ENST00000421922 TUBGCP5Q96RT8 1024 aa17.28■□□□□ 0.36
CCDC28B-202ENST00000421922 P2RY13Q9BPV8 354 aa17.28■□□□□ 0.36
CCDC28B-202ENST00000421922 C8orf33Q9H7E9 229 aaPredicted RBP17.28■□□□□ 0.36
CCDC28B-202ENST00000421922 ARNT2Q9HBZ2 717 aa17.28■□□□□ 0.36
CCDC28B-202ENST00000421922 NCOR1O75376 2440 aa17.27■□□□□ 0.36
CCDC28B-202ENST00000421922 MYLKQ15746 1914 aa17.27■□□□□ 0.36
CCDC28B-202ENST00000421922 EXOC1LA0A1B0GW35 172 aa17.27■□□□□ 0.35
CCDC28B-202ENST00000421922 HEATR9A2RTY3 570 aa17.27■□□□□ 0.35
CCDC28B-202ENST00000421922 PRRT4C9JH25 899 aa17.27■□□□□ 0.35
CCDC28B-202ENST00000421922 ALADP13716 330 aa17.27■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 131.3 ms