RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 IGDCC4Q8TDY8 1250 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 SPIRE2Q8WWL2 714 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 THRSPQ92748 146 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 CRELD1Q96HD1 420 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 HPDLQ96IR7 371 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 RGS17Q9UGC6 210 aaPredicted RBP12.98□□□□□ -0.33
COL6A3-206ENST00000409809 ZNF609O15014 1411 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 GRIA1P42261 906 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 ARF5P84085 180 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 TDGQ13569 410 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 ZNF234Q14588 700 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 UBQLN2Q9UHD9 624 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 PDCD5O14737 125 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 RP2O75695 350 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 UGT2B4P06133 528 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 CA9Q16790 459 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 PITRM1Q5JRX3 1037 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 ANGEL2Q5VTE6 544 aaKnown RBP12.98□□□□□ -0.33
COL6A3-206ENST00000409809 MCOLN3Q8TDD5 553 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 CCDC88AQ3V6T2 1871 aa12.98□□□□□ -0.33
COL6A3-206ENST00000409809 PSIP1O75475 530 aaKnown RBP12.97□□□□□ -0.33
COL6A3-206ENST00000409809 PRKCIP41743 596 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 MPP1Q00013 466 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 SBK1Q52WX2 424 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 ANXA8L1Q5VT79 327 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 SPESP1Q6UW49 350 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 SLITRK1Q96PX8 696 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 NLNQ9BYT8 704 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 HMGXB4Q9UGU5 601 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 DLC1Q96QB1 1528 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 USP17L15C9J2P7 530 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 USP17L13C9JLJ4 530 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 KBTBD13C9JR72 458 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 USP17L11C9JVI0 530 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 USP17L18D6R9N7 530 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 USP17L22D6RA61 530 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 USP17L17D6RBQ6 530 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 USP17L19D6RCP7 530 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 USP17L20D6RJB6 530 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 CXCR2P25025 360 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 USP17L24Q0WX57 530 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 USP17L6PQ6QN14 398 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 CBWD2Q8IUF1 395 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 OR5J2Q8NH18 312 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 ATMINO43313 823 aaPredicted RBP12.97□□□□□ -0.33
COL6A3-206ENST00000409809 PRKAB2O43741 272 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 ATXN8OSP0DMR3 200 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 MZF1P28698 734 aaPredicted RBP12.97□□□□□ -0.33
COL6A3-206ENST00000409809 IQCKQ8N0W5 287 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 WDCPQ9H6R7 721 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 GRHL1Q9NZI5 618 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 FAM86C2PA6NEL3 165 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 SEC22BO75396 215 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 C7P10643 843 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 BMP7P18075 431 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 AVPR1AP37288 418 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 WDR59Q6PJI9 974 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 HERC6Q8IVU3 1022 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 DNAJC10Q8IXB1 793 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 PSME2Q9UL46 239 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 OVOS2A0A0J9YW53 1432 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 OVOS2Q6IE36 1432 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 LOC102724428A0A0B4J2F2 783 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 NMT2O60551 498 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 ZNF7P17097 686 aaPredicted RBP12.97□□□□□ -0.33
COL6A3-206ENST00000409809 RPS9P46781 194 aaKnown RBP12.97□□□□□ -0.33
COL6A3-206ENST00000409809 SIK1P57059 783 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 C6orf183Q5T699 404 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 MFSD7Q6UXD7 560 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 TCEAL4Q96EI5 215 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 TULP4Q9NRJ4 1543 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 ANGPTL1O95841 491 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 BMT2Q1RMZ1 405 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 CMTR2Q8IYT2 770 aaKnown RBP12.97□□□□□ -0.33
COL6A3-206ENST00000409809 HS6ST3Q8IZP7 471 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 HTR3CQ8WXA8 447 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 MAGED1Q9Y5V3 778 aaPredicted RBP12.97□□□□□ -0.33
COL6A3-206ENST00000409809 PMF1-BGLAPU3KQ54 211 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 PPEF1O14829 653 aaPredicted RBP12.97□□□□□ -0.33
COL6A3-206ENST00000409809 BNIP3LO60238 219 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 COL6A2P12110 1019 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 MAGEA12P43365 314 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 SSTP61278 116 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 ADNP2Q6IQ32 1131 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 TIGD4Q8IY51 512 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 RC3H2Q9HBD1 1191 aaKnown RBP12.97□□□□□ -0.33
COL6A3-206ENST00000409809 CRYL1Q9Y2S2 319 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 DUSP10Q9Y6W6 482 aa12.97□□□□□ -0.33
COL6A3-206ENST00000409809 TRIM64A6NGJ6 449 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 TRIM64BA6NI03 449 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 C2orf74A8MZ97 194 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 CCRL2O00421 344 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 LTA4HP09960 611 aaKnown RBP12.96□□□□□ -0.33
COL6A3-206ENST00000409809 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.96□□□□□ -0.33
COL6A3-206ENST00000409809 KAT2AQ92830 837 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 ADAM33Q9BZ11 813 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 SCUBE2Q9NQ36 999 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 NECTIN3Q9NQS3 549 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 CYP3A7-CYP3A51PA0A087WV96 503 aa12.96□□□□□ -0.33
COL6A3-206ENST00000409809 PLIN3O60664 434 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms