RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 PRPSAP1Q14558 356 aa21.17■□□□□ 0.98
CTCF-202ENST00000401394 KCTD2Q14681 263 aa21.17■□□□□ 0.98
CTCF-202ENST00000401394 ZBTB6Q15916 424 aa21.17■□□□□ 0.98
CTCF-202ENST00000401394 PLA2G4EQ3MJ16 856 aa21.17■□□□□ 0.98
CTCF-202ENST00000401394 CLEC20AQ6ZU45 233 aa21.17■□□□□ 0.98
CTCF-202ENST00000401394 LINC01465Q8N7H1 131 aa21.17■□□□□ 0.98
CTCF-202ENST00000401394 ZNF597Q96LX8 424 aa21.17■□□□□ 0.98
CTCF-202ENST00000401394 TSNARE1Q96NA8 513 aa21.17■□□□□ 0.98
CTCF-202ENST00000401394 IL22Q9GZX6 179 aa21.17■□□□□ 0.98
CTCF-202ENST00000401394 POLR2AP24928 1970 aaKnown RBP21.17■□□□□ 0.98
CTCF-202ENST00000401394 SMIM28A0A1B0GU29 152 aa21.17■□□□□ 0.98
CTCF-202ENST00000401394 PSMD12O00232 456 aaPredicted RBP21.17■□□□□ 0.98
CTCF-202ENST00000401394 LRIG2O94898 1065 aa21.17■□□□□ 0.98
CTCF-202ENST00000401394 NOS2P35228 1153 aa21.17■□□□□ 0.98
CTCF-202ENST00000401394 KLC3Q6P597 504 aa21.17■□□□□ 0.98
CTCF-202ENST00000401394 XKR5Q6UX68 686 aa21.17■□□□□ 0.98
CTCF-202ENST00000401394 IFNEQ86WN2 208 aa21.17■□□□□ 0.98
CTCF-202ENST00000401394 SIX6OS1Q8N1H7 587 aa21.17■□□□□ 0.98
CTCF-202ENST00000401394 USP22Q9UPT9 525 aa21.17■□□□□ 0.98
CTCF-202ENST00000401394 CLEC11AQ9Y240 323 aa21.17■□□□□ 0.98
CTCF-202ENST00000401394 ATP6V1G1O75348 118 aa21.16■□□□□ 0.98
CTCF-202ENST00000401394 TADA2AO75478 443 aa21.16■□□□□ 0.98
CTCF-202ENST00000401394 STAMBPO95630 424 aa21.16■□□□□ 0.98
CTCF-202ENST00000401394 OXTRP30559 389 aa21.16■□□□□ 0.98
CTCF-202ENST00000401394 MAGEA10P43363 369 aaPredicted RBP21.16■□□□□ 0.98
CTCF-202ENST00000401394 CCR3P51677 355 aa21.16■□□□□ 0.98
CTCF-202ENST00000401394 SLC16A10Q8TF71 515 aa21.16■□□□□ 0.98
CTCF-202ENST00000401394 RMND5BQ96G75 393 aaPredicted RBP21.16■□□□□ 0.98
CTCF-202ENST00000401394 RANBP9Q96S59 729 aa21.16■□□□□ 0.98
CTCF-202ENST00000401394 FICDQ9BVA6 458 aa21.16■□□□□ 0.98
CTCF-202ENST00000401394 SMOXQ9NWM0 555 aa21.16■□□□□ 0.98
CTCF-202ENST00000401394 DLGAP1O14490 977 aa21.16■□□□□ 0.98
CTCF-202ENST00000401394 ZSCAN9O15535 394 aaPredicted RBP21.16■□□□□ 0.98
CTCF-202ENST00000401394 B4GAT1O43505 415 aa21.16■□□□□ 0.98
CTCF-202ENST00000401394 CYP2C8P10632 490 aa21.16■□□□□ 0.98
CTCF-202ENST00000401394 ZNF23P17027 643 aa21.16■□□□□ 0.98
CTCF-202ENST00000401394 RAB10P61026 200 aa21.16■□□□□ 0.98
CTCF-202ENST00000401394 RHDQ02161 417 aa21.16■□□□□ 0.98
CTCF-202ENST00000401394 APPL2Q8NEU8 664 aa21.16■□□□□ 0.98
CTCF-202ENST00000401394 C16orf70Q9BSU1 422 aa21.16■□□□□ 0.98
CTCF-202ENST00000401394 TKTL2Q9H0I9 626 aa21.16■□□□□ 0.98
CTCF-202ENST00000401394 CHCHD3Q9NX63 227 aaKnown RBP21.16■□□□□ 0.98
CTCF-202ENST00000401394 OR12D3Q9UGF7 316 aa21.16■□□□□ 0.98
CTCF-202ENST00000401394 H3BRB1 525 aa21.15■□□□□ 0.98
CTCF-202ENST00000401394 ATE1O95260 518 aa21.15■□□□□ 0.98
CTCF-202ENST00000401394 STMN1P16949 149 aa21.15■□□□□ 0.98
CTCF-202ENST00000401394 CSRP3P50461 194 aa21.15■□□□□ 0.98
CTCF-202ENST00000401394 MAMDC4Q6UXC1 1216 aa21.15■□□□□ 0.98
CTCF-202ENST00000401394 ARMCX2Q7L311 632 aa21.15■□□□□ 0.98
CTCF-202ENST00000401394 PIM3Q86V86 326 aa21.15■□□□□ 0.98
CTCF-202ENST00000401394 EPHX4Q8IUS5 362 aa21.15■□□□□ 0.98
CTCF-202ENST00000401394 PELI3Q8N2H9 469 aa21.15■□□□□ 0.98
CTCF-202ENST00000401394 TUT1Q9H6E5 874 aaKnown RBP21.15■□□□□ 0.98
CTCF-202ENST00000401394 RRN3Q9NYV6 651 aa21.15■□□□□ 0.98
CTCF-202ENST00000401394 EVLQ9UI08 416 aaPredicted RBP21.15■□□□□ 0.98
CTCF-202ENST00000401394 OR51F1A6NGY5 319 aa21.15■□□□□ 0.98
CTCF-202ENST00000401394 MRASO14807 208 aa21.15■□□□□ 0.98
CTCF-202ENST00000401394 TRIM24O15164 1050 aa21.15■□□□□ 0.98
CTCF-202ENST00000401394 UBDO15205 165 aa21.15■□□□□ 0.98
CTCF-202ENST00000401394 VPS26BQ4G0F5 336 aa21.15■□□□□ 0.98
CTCF-202ENST00000401394 BEST2Q8NFU1 509 aa21.15■□□□□ 0.98
CTCF-202ENST00000401394 NFKBIZQ9BYH8 718 aa21.15■□□□□ 0.98
CTCF-202ENST00000401394 VPS28Q9UK41 221 aa21.15■□□□□ 0.98
CTCF-202ENST00000401394 MYRFQ9Y2G1 1151 aa21.15■□□□□ 0.98
CTCF-202ENST00000401394 MTHFD1P11586 935 aaKnown RBP21.15■□□□□ 0.98
CTCF-202ENST00000401394 LRPAP1P30533 357 aa21.15■□□□□ 0.98
CTCF-202ENST00000401394 SLC5A3P53794 718 aa21.15■□□□□ 0.98
CTCF-202ENST00000401394 TTLL4Q14679 1199 aa21.15■□□□□ 0.98
CTCF-202ENST00000401394 USP41Q3LFD5 358 aa21.15■□□□□ 0.98
CTCF-202ENST00000401394 FUNDC1Q8IVP5 155 aa21.15■□□□□ 0.98
CTCF-202ENST00000401394 CRYBG2Q8N1P7 616 aa21.15■□□□□ 0.98
CTCF-202ENST00000401394 RYBPQ8N488 228 aaPredicted RBP21.15■□□□□ 0.98
CTCF-202ENST00000401394 NUDT8Q8WV74 236 aa21.15■□□□□ 0.98
CTCF-202ENST00000401394 FAF1Q9UNN5 650 aaPredicted RBP21.15■□□□□ 0.98
CTCF-202ENST00000401394 LAMA2P24043 3122 aaKnown RBP21.14■□□□□ 0.98
CTCF-202ENST00000401394 A0A1B0GTL3 188 aa21.14■□□□□ 0.97
CTCF-202ENST00000401394 HEATR9A2RTY3 570 aa21.14■□□□□ 0.97
CTCF-202ENST00000401394 ALDOCP09972 364 aaKnown RBP21.14■□□□□ 0.97
CTCF-202ENST00000401394 RPL26P61254 145 aaKnown RBP21.14■□□□□ 0.97
CTCF-202ENST00000401394 DALRD3Q5D0E6 543 aaKnown RBP21.14■□□□□ 0.97
CTCF-202ENST00000401394 NHSL2Q5HYW2 709 aa21.14■□□□□ 0.97
CTCF-202ENST00000401394 CUZD1Q86UP6 607 aa21.14■□□□□ 0.97
CTCF-202ENST00000401394 TEKT5Q96M29 485 aa21.14■□□□□ 0.97
CTCF-202ENST00000401394 KCNA7Q96RP8 456 aa21.14■□□□□ 0.97
CTCF-202ENST00000401394 MYBPHLA2RUH7 354 aa21.14■□□□□ 0.97
CTCF-202ENST00000401394 NCK1P16333 377 aa21.14■□□□□ 0.97
CTCF-202ENST00000401394 FOXA1P55317 472 aa21.14■□□□□ 0.97
CTCF-202ENST00000401394 PLCL1Q15111 1095 aa21.14■□□□□ 0.97
CTCF-202ENST00000401394 GRIK4Q16099 956 aa21.14■□□□□ 0.97
CTCF-202ENST00000401394 BTBD8Q5XKL5 378 aa21.14■□□□□ 0.97
CTCF-202ENST00000401394 FASTKD5Q7L8L6 764 aaKnown RBP21.14■□□□□ 0.97
CTCF-202ENST00000401394 NT5C3BQ969T7 300 aa21.14■□□□□ 0.97
CTCF-202ENST00000401394 C12orf43Q96C57 262 aaKnown RBP21.14■□□□□ 0.97
CTCF-202ENST00000401394 DUSP16Q9BY84 665 aa21.14■□□□□ 0.97
CTCF-202ENST00000401394 TTC3P53804 2025 aa21.14■□□□□ 0.97
CTCF-202ENST00000401394 GPC4O75487 556 aa21.13■□□□□ 0.97
CTCF-202ENST00000401394 DAB1O75553 588 aa21.13■□□□□ 0.97
CTCF-202ENST00000401394 SIX3O95343 332 aaPredicted RBP21.13■□□□□ 0.97
CTCF-202ENST00000401394 NPR3P17342 541 aa21.13■□□□□ 0.97
CTCF-202ENST00000401394 BDNFP23560 247 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms