RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 NPNTQ6UXI9 565 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 SLC41A1Q8IVJ1 513 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 SPATA20Q8TB22 786 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 HAS1Q92839 578 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 OSGEPL1Q9H4B0 414 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 SPON1Q9HCB6 807 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 TRNAU1APQ9NX07 287 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 KLQ9UEF7 1012 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 LOC100506127A0A0U1RQW1 187 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 HSF2Q03933 536 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 ARMC12Q5T9G4 340 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 IRF2BP2Q7Z5L9 587 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 LGI2Q8N0V4 545 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 TTC29Q8NA56 475 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 BPIFB6Q8NFQ5 453 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 PPP3R2Q96LZ3 170 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 BBS4Q96RK4 519 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 ABCB10Q9NRK6 738 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 VPS45Q9NRW7 570 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 ARL15Q9NXU5 204 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 BAZ2BQ9UIF8 2168 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 ITGA2BP08514 1039 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 ABL2P42684 1182 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 IDH2P48735 452 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 ARF3P61204 181 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 NOMO3P69849 1222 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 ARF1P84077 181 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 ISLR2Q6UXK2 745 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 SELENOMQ8WWX9 145 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 QRFPRQ96P65 431 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 SLC4A5Q9BY07 1137 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 PCDH12Q9NPG4 1184 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 ABCC13Q9NSE7 274 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 PRKAG3Q9UGI9 489 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 USP20Q9Y2K6 914 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 GMPPBQ9Y5P6 360 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 UBE2QL1A1L167 161 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 RPN2P04844 631 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 ANXA5P08758 320 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 PBX1P40424 430 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 BCL2L1Q07817 233 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 TUBB3Q13509 450 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 CCNIQ14094 377 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 BMT2Q1RMZ1 405 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 TYSND1Q2T9J0 566 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 RFX4Q33E94 735 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 PAGE2BQ5JRK9 111 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 LIPMQ5VYY2 423 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 MZT2AQ6P582 158 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 BORCS5Q969J3 196 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 MOV10Q9HCE1 1003 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 PLA2G4CQ9UP65 541 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 AP4B1Q9Y6B7 739 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 TSPAN3O60637 253 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 ZMPSTE24O75844 475 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 CATP04040 527 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 TFEBP19484 476 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 RAB10P61026 200 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 CSNK2BP67870 215 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 MAPKAPK3Q16644 382 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 SPESP1Q6UW49 350 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 RBM44Q6ZP01 1051 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 DEPDC4Q8N2C3 294 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 MYDGFQ969H8 173 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 OSBPL6Q9BZF3 934 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 OR12D3Q9UGF7 316 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 FAM50BQ9Y247 325 aa10.34□□□□□ -0.75
LIMCH1-203ENST00000396595 SMCO3A2RU48 225 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 HOXC6P09630 235 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 CYP2A6P11509 494 aaPredicted RBP10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 USP46P62068 366 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 POU5F1Q01860 360 aaKnown RBP10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 FOLH1Q04609 750 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 UBAP2LQ14157 1087 aaKnown RBP10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 CYP2A13Q16696 494 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 ATP13A4Q4VNC1 1196 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 ZNF549Q6P9A3 640 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 MINDY2Q8NBR6 621 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 RCN3Q96D15 328 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 ACP6Q9NPH0 428 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 SNX6Q9UNH7 406 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 REXO2Q9Y3B8 237 aaKnown RBP10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 ITSN1Q15811 1721 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 MATN2O00339 956 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 CABYRO75952 493 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 POMCP01189 267 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 ERBB2P04626 1255 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 MARSP56192 900 aaKnown RBP10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 CRADDP78560 199 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 PRKG2Q13237 762 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 SKIV2LQ15477 1246 aaKnown RBP10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 NBPF12Q5TAG4 269 aaPredicted RBP10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 MFSD5Q6N075 450 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 FAM183BPQ6ZVS7 135 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 DNAJB3Q8WWF6 145 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 MARK4Q96L34 752 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 TMEM106CQ9BVX2 250 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 CLK4Q9HAZ1 481 aaKnown RBP10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 DHRS12A0PJE2 317 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 TRAFD1O14545 582 aaPredicted RBP10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms