RNA–Protein interactions for RNA: ENST00000392449.4

PTPRK-208, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 1,456 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-208ENST00000392449 TNFAIP3P21580 790 aa16.79■□□□□ 0.28
PTPRK-208ENST00000392449 TPI1P60174 286 aa16.79■□□□□ 0.28
PTPRK-208ENST00000392449 PFN3P60673 137 aa16.79■□□□□ 0.28
PTPRK-208ENST00000392449 HNRNPKP61978 463 aaKnown RBP eCLIP16.79■□□□□ 0.281e-9■■■■■ 28.4
PTPRK-208ENST00000392449 MAMLD1Q13495 774 aa16.79■□□□□ 0.28
PTPRK-208ENST00000392449 DEFB133Q30KQ1 61 aa16.79■□□□□ 0.28
PTPRK-208ENST00000392449 NYAP1Q6ZVC0 841 aa16.79■□□□□ 0.28
PTPRK-208ENST00000392449 DCBLD1Q8N8Z6 715 aa16.79■□□□□ 0.28
PTPRK-208ENST00000392449 CENPTQ96BT3 561 aa16.79■□□□□ 0.28
PTPRK-208ENST00000392449 IFT43Q96FT9 208 aa16.79■□□□□ 0.28
PTPRK-208ENST00000392449 LENG8Q96PV6 779 aaPredicted RBP16.79■□□□□ 0.28
PTPRK-208ENST00000392449 RTN4Q9NQC3 1192 aaKnown RBP16.79■□□□□ 0.28
PTPRK-208ENST00000392449 PCSK1NQ9UHG2 260 aa16.79■□□□□ 0.28
PTPRK-208ENST00000392449 WASH4PA8MWX3 477 aa16.78■□□□□ 0.28
PTPRK-208ENST00000392449 CASC3O15234 703 aaKnown RBP16.78■□□□□ 0.28
PTPRK-208ENST00000392449 BRINP1O60477 761 aa16.78■□□□□ 0.28
PTPRK-208ENST00000392449 MBD3O95983 291 aa16.78■□□□□ 0.28
PTPRK-208ENST00000392449 MT-CO3P00414 261 aa16.78■□□□□ 0.28
PTPRK-208ENST00000392449 PRKCGP05129 697 aa16.78■□□□□ 0.28
PTPRK-208ENST00000392449 JUNDP17535 347 aa16.78■□□□□ 0.28
PTPRK-208ENST00000392449 PSMA2P25787 234 aa16.78■□□□□ 0.28
PTPRK-208ENST00000392449 YBEYP58557 167 aaPredicted RBP16.78■□□□□ 0.28
PTPRK-208ENST00000392449 TCEA2Q15560 299 aa16.78■□□□□ 0.28
PTPRK-208ENST00000392449 CDKN3Q16667 212 aa16.78■□□□□ 0.28
PTPRK-208ENST00000392449 PARP15Q460N3 678 aa16.78■□□□□ 0.28
PTPRK-208ENST00000392449 DCP2Q8IU60 420 aaKnown RBP16.78■□□□□ 0.28
PTPRK-208ENST00000392449 UMODL1-AS1Q8N2C9 162 aa16.78■□□□□ 0.28
PTPRK-208ENST00000392449 LMX1AQ8TE12 382 aa16.78■□□□□ 0.28
PTPRK-208ENST00000392449 DHX35Q9H5Z1 703 aaKnown RBP16.78■□□□□ 0.28
PTPRK-208ENST00000392449 LRRC19Q9H756 370 aa16.78■□□□□ 0.28
PTPRK-208ENST00000392449 CATSPERBQ9H7T0 1116 aa16.78■□□□□ 0.28
PTPRK-208ENST00000392449 PDFQ9HBH1 243 aa16.78■□□□□ 0.28
PTPRK-208ENST00000392449 AP4E1Q9UPM8 1137 aa16.78■□□□□ 0.28
PTPRK-208ENST00000392449 ASXL3Q9C0F0 2248 aa16.77■□□□□ 0.28
PTPRK-208ENST00000392449 COL27A1Q8IZC6 1860 aaPredicted RBP16.77■□□□□ 0.28
PTPRK-208ENST00000392449 AQP9O43315 295 aa16.77■□□□□ 0.28
PTPRK-208ENST00000392449 OPA1O60313 960 aa16.77■□□□□ 0.28
PTPRK-208ENST00000392449 GCATO75600 419 aa16.77■□□□□ 0.28
PTPRK-208ENST00000392449 ALPPL2P10696 532 aa16.77■□□□□ 0.28
PTPRK-208ENST00000392449 RGRP47804 291 aa16.77■□□□□ 0.28
PTPRK-208ENST00000392449 C1orf61Q13536 156 aa16.77■□□□□ 0.28
PTPRK-208ENST00000392449 RTP5Q14D33 572 aa16.77■□□□□ 0.28
PTPRK-208ENST00000392449 KLHL40Q2TBA0 621 aa16.77■□□□□ 0.28
PTPRK-208ENST00000392449 SOWAHCQ53LP3 525 aaPredicted RBP16.77■□□□□ 0.28
PTPRK-208ENST00000392449 INO80DQ53TQ3 878 aaPredicted RBP16.77■□□□□ 0.28
PTPRK-208ENST00000392449 CYP4V2Q6ZWL3 525 aaPredicted RBP16.77■□□□□ 0.28
PTPRK-208ENST00000392449 ZNF571Q7Z3V5 609 aaPredicted RBP16.77■□□□□ 0.28
PTPRK-208ENST00000392449 ZSWIM9Q86XI8 627 aa16.77■□□□□ 0.28
PTPRK-208ENST00000392449 FAM174AQ8TBP5 190 aa16.77■□□□□ 0.28
PTPRK-208ENST00000392449 CXorf40AQ8TE69 158 aa16.77■□□□□ 0.28
PTPRK-208ENST00000392449 BBC3Q96PG8 261 aaPredicted RBP16.77■□□□□ 0.28
PTPRK-208ENST00000392449 KCTD15Q96SI1 283 aaPredicted RBP16.77■□□□□ 0.28
PTPRK-208ENST00000392449 NCAPGQ9BPX3 1015 aa16.77■□□□□ 0.28
PTPRK-208ENST00000392449 SNRNP25Q9BV90 132 aaKnown RBP16.77■□□□□ 0.28
PTPRK-208ENST00000392449 SLC39A8Q9C0K1 460 aa16.77■□□□□ 0.28
PTPRK-208ENST00000392449 NRSN2Q9GZP1 204 aa16.77■□□□□ 0.28
PTPRK-208ENST00000392449 HAUS4Q9H6D7 363 aa16.77■□□□□ 0.28
PTPRK-208ENST00000392449 UBA2Q9UBT2 640 aaPredicted RBP16.77■□□□□ 0.28
PTPRK-208ENST00000392449 ANKRD36A6QL64 1941 aa16.77■□□□□ 0.28
PTPRK-208ENST00000392449 NEMP2A6NFY4 417 aa16.76■□□□□ 0.27
PTPRK-208ENST00000392449 H3BM21 787 aa16.76■□□□□ 0.27
PTPRK-208ENST00000392449 FGF10O15520 208 aaPredicted RBP16.76■□□□□ 0.27
PTPRK-208ENST00000392449 BUB1BO60566 1050 aaPredicted RBP16.76■□□□□ 0.27
PTPRK-208ENST00000392449 AIF1P55008 147 aa16.76■□□□□ 0.27
PTPRK-208ENST00000392449 E2F1Q01094 437 aa16.76■□□□□ 0.27
PTPRK-208ENST00000392449 RAD51Q06609 339 aa16.76■□□□□ 0.27
PTPRK-208ENST00000392449 IRF4Q15306 451 aa16.76■□□□□ 0.27
PTPRK-208ENST00000392449 ASIC2Q16515 512 aa16.76■□□□□ 0.27
PTPRK-208ENST00000392449 PLEKHA7Q6IQ23 1121 aa16.76■□□□□ 0.27
PTPRK-208ENST00000392449 GUSBP11Q6P575 273 aa16.76■□□□□ 0.27
PTPRK-208ENST00000392449 CRTC1Q6UUV9 634 aa16.76■□□□□ 0.27
PTPRK-208ENST00000392449 ARHGAP36Q6ZRI8 547 aa16.76■□□□□ 0.27
PTPRK-208ENST00000392449 TP53INP2Q8IXH6 220 aa16.76■□□□□ 0.27
PTPRK-208ENST00000392449 NPWQ8N729 165 aa16.76■□□□□ 0.27
PTPRK-208ENST00000392449 TP53I13Q8NBR0 393 aaPredicted RBP16.76■□□□□ 0.27
PTPRK-208ENST00000392449 DENND6BQ8NEG7 585 aa16.76■□□□□ 0.27
PTPRK-208ENST00000392449 IFI44Q8TCB0 444 aa16.76■□□□□ 0.27
PTPRK-208ENST00000392449 CASKIN2Q8WXE0 1202 aa16.76■□□□□ 0.27
PTPRK-208ENST00000392449 ASB12Q8WXK4 309 aa16.76■□□□□ 0.27
PTPRK-208ENST00000392449 ARHGEF26Q96DR7 871 aa16.76■□□□□ 0.27
PTPRK-208ENST00000392449 NAP1L5Q96NT1 182 aaPredicted RBP16.76■□□□□ 0.27
PTPRK-208ENST00000392449 MFHAS1Q9Y4C4 1052 aa16.76■□□□□ 0.27
PTPRK-208ENST00000392449 CPED1A4D0V7 1026 aa16.75■□□□□ 0.27
PTPRK-208ENST00000392449 EEF2KO00418 725 aaKnown RBP16.75■□□□□ 0.27
PTPRK-208ENST00000392449 TM7SF2O76062 418 aa16.75■□□□□ 0.27
PTPRK-208ENST00000392449 MPOP05164 745 aa16.75■□□□□ 0.27
PTPRK-208ENST00000392449 CELA2BP08218 269 aaPredicted RBP16.75■□□□□ 0.27
PTPRK-208ENST00000392449 CCDC172P0C7W6 258 aa16.75■□□□□ 0.27
PTPRK-208ENST00000392449 SKILP12757 684 aa16.75■□□□□ 0.27
PTPRK-208ENST00000392449 EIF2S3P41091 472 aaKnown RBP16.75■□□□□ 0.27
PTPRK-208ENST00000392449 PAPOLAP51003 745 aaKnown RBP16.75■□□□□ 0.27
PTPRK-208ENST00000392449 THOP1P52888 689 aa16.75■□□□□ 0.27
PTPRK-208ENST00000392449 PRRT3Q5FWE3 981 aa16.75■□□□□ 0.27
PTPRK-208ENST00000392449 CDCP2Q5VXM1 449 aa16.75■□□□□ 0.27
PTPRK-208ENST00000392449 CAMK1DQ8IU85 385 aa16.75■□□□□ 0.27
PTPRK-208ENST00000392449 PHACTR4Q8IZ21 702 aa16.75■□□□□ 0.27
PTPRK-208ENST00000392449 FAM181AQ8N9Y4 354 aa16.75■□□□□ 0.27
PTPRK-208ENST00000392449 TSEN2Q8NCE0 465 aaKnown RBP16.75■□□□□ 0.27
PTPRK-208ENST00000392449 LRRC61Q9BV99 259 aa16.75■□□□□ 0.27
PTPRK-208ENST00000392449 PCDH12Q9NPG4 1184 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms