RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 TDHQ8IZJ6 230 aa18.39■□□□□ 0.53
CCDC88C-203ENST00000389856 C4orf33Q8N1A6 199 aa18.39■□□□□ 0.53
CCDC88C-203ENST00000389856 OR52K2Q8NGK3 314 aa18.39■□□□□ 0.53
CCDC88C-203ENST00000389856 PAIP2Q9BPZ3 127 aaKnown RBP18.39■□□□□ 0.53
CCDC88C-203ENST00000389856 KIFC1Q9BW19 673 aa18.39■□□□□ 0.53
CCDC88C-203ENST00000389856 NSUN3Q9H649 340 aaKnown RBP18.39■□□□□ 0.53
CCDC88C-203ENST00000389856 PIH1D1Q9NWS0 290 aaKnown RBP18.39■□□□□ 0.53
CCDC88C-203ENST00000389856 CCL26Q9Y258 94 aa18.39■□□□□ 0.53
CCDC88C-203ENST00000389856 ATG2AQ2TAZ0 1938 aa18.39■□□□□ 0.53
CCDC88C-203ENST00000389856 A0A1W2PPM1 405 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 HEATR9A2RTY3 570 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 FSHRP23945 695 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 SERPINH1P50454 418 aaKnown RBP18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 CRADDP78560 199 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 CDK18Q07002 472 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 DMC1Q14565 340 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 SETDB1Q15047 1291 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 ANKRD20A4Q4UJ75 823 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 PKN3Q6P5Z2 889 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 TMC5Q6UXY8 1006 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 TMEM184AQ6ZMB5 413 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 MARK2Q7KZI7 788 aaKnown RBP18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 PGBD5Q8N414 524 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 CCDC63Q8NA47 563 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 VN1R2Q8NFZ6 395 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 IRF7Q92985 503 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 MRRFQ96E11 262 aaKnown RBP18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 CERS2Q96G23 380 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 NUDCD1Q96RS6 583 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 RANBP9Q96S59 729 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 SLC2A11Q9BYW1 496 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 ABCF3Q9NUQ8 709 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 MKS1Q9NXB0 559 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 ZFATQ9P243 1243 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 PHTF1Q9UMS5 762 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 OR51B4Q9Y5P0 310 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 NOTCH4Q99466 2003 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 INSIG1O15503 277 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 ZMPSTE24O75844 475 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 DCTN3O75935 186 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 PENKP01210 267 aaPredicted RBP18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 IL1BP01584 269 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 MZF1P28698 734 aaPredicted RBP18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 ARF5P84085 180 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 SULT2A1Q06520 285 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 KCNC3Q14003 757 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 EFTUD2Q15029 972 aaKnown RBP eCLIP18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 ZKSCAN8Q15776 578 aaPredicted RBP18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 SPRED3Q2MJR0 410 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 FSCBQ5H9T9 825 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 CERCAMQ5T4B2 595 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 PDPK2PQ6A1A2 396 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 LVRNQ6Q4G3 990 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 RASSF3Q86WH2 238 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 MAGEC3Q8TD91 643 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 ING5Q8WYH8 240 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 APOPT1Q96IL0 206 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 BBS2Q9BXC9 721 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 SPHK2Q9NRA0 654 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 GDE1Q9NZC3 331 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 MARK1Q9P0L2 795 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 VPS51Q9UID3 782 aa18.38■□□□□ 0.53
CCDC88C-203ENST00000389856 LOC285095A0A1B0GVY8 99 aa18.37■□□□□ 0.53
CCDC88C-203ENST00000389856 TMCC1O94876 653 aa18.37■□□□□ 0.53
CCDC88C-203ENST00000389856 PRAMEF12O95522 483 aa18.37■□□□□ 0.53
CCDC88C-203ENST00000389856 MMP2P08253 660 aa18.37■□□□□ 0.53
CCDC88C-203ENST00000389856 SNRPAP09012 282 aaKnown RBP18.37■□□□□ 0.53
CCDC88C-203ENST00000389856 HOXB8P17481 243 aaPredicted RBP18.37■□□□□ 0.53
CCDC88C-203ENST00000389856 RHOAP61586 193 aa18.37■□□□□ 0.53
CCDC88C-203ENST00000389856 OLIG2Q13516 323 aa18.37■□□□□ 0.53
CCDC88C-203ENST00000389856 CYTH1Q15438 398 aa18.37■□□□□ 0.53
CCDC88C-203ENST00000389856 SLC1A5Q15758 541 aa18.37■□□□□ 0.53
CCDC88C-203ENST00000389856 DENND5AQ6IQ26 1287 aa18.37■□□□□ 0.53
CCDC88C-203ENST00000389856 CGB2Q6NT52 195 aa18.37■□□□□ 0.53
CCDC88C-203ENST00000389856 TRIM42Q8IWZ5 723 aa18.37■□□□□ 0.53
CCDC88C-203ENST00000389856 EFHBQ8N7U6 833 aa18.37■□□□□ 0.53
CCDC88C-203ENST00000389856 ZNF75CPQ92670 426 aaPredicted RBP18.37■□□□□ 0.53
CCDC88C-203ENST00000389856 ADGRE3Q9BY15 652 aa18.37■□□□□ 0.53
CCDC88C-203ENST00000389856 TCAF1Q9Y4C2 921 aa18.37■□□□□ 0.53
CCDC88C-203ENST00000389856 NRG2O14511 850 aaPredicted RBP18.36■□□□□ 0.53
CCDC88C-203ENST00000389856 UBOX5O94941 541 aa18.36■□□□□ 0.53
CCDC88C-203ENST00000389856 NDST3O95803 873 aa18.36■□□□□ 0.53
CCDC88C-203ENST00000389856 TPH1P17752 444 aa18.36■□□□□ 0.53
CCDC88C-203ENST00000389856 GLDCP23378 1020 aa18.36■□□□□ 0.53
CCDC88C-203ENST00000389856 AP1S1P61966 158 aa18.36■□□□□ 0.53
CCDC88C-203ENST00000389856 LMAN2Q12907 356 aa18.36■□□□□ 0.53
CCDC88C-203ENST00000389856 DNAJC3Q13217 504 aa18.36■□□□□ 0.53
CCDC88C-203ENST00000389856 RIPK1Q13546 671 aa18.36■□□□□ 0.53
CCDC88C-203ENST00000389856 PLEKHG6Q3KR16 790 aa18.36■□□□□ 0.53
CCDC88C-203ENST00000389856 RARS2Q5T160 578 aaKnown RBP18.36■□□□□ 0.53
CCDC88C-203ENST00000389856 CYB5D1Q6P9G0 228 aa18.36■□□□□ 0.53
CCDC88C-203ENST00000389856 GPR149Q86SP6 731 aa18.36■□□□□ 0.53
CCDC88C-203ENST00000389856 C12orf76Q8N812 135 aaPredicted RBP18.36■□□□□ 0.53
CCDC88C-203ENST00000389856 ITFG1Q8TB96 612 aa18.36■□□□□ 0.53
CCDC88C-203ENST00000389856 PEX13Q92968 403 aa18.36■□□□□ 0.53
CCDC88C-203ENST00000389856 BHMTQ93088 406 aa18.36■□□□□ 0.53
CCDC88C-203ENST00000389856 ALG14Q96F25 216 aa18.36■□□□□ 0.53
CCDC88C-203ENST00000389856 IGFLR1Q9H665 355 aa18.36■□□□□ 0.53
CCDC88C-203ENST00000389856 PLAC1Q9HBJ0 212 aa18.36■□□□□ 0.53
CCDC88C-203ENST00000389856 TXLNGQ9NUQ3 528 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms