RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 ILKAPQ9H0C8 392 aaPredicted RBP13.51□□□□□ -0.25
CCDC3-202ENST00000378839 ZNF385DQ9H6B1 395 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 CDH22Q9UJ99 828 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 FBXO5Q9UKT4 447 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 RAP2CQ9Y3L5 183 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.51□□□□□ -0.25
CCDC3-202ENST00000378839 TLL2Q9Y6L7 1015 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 MKI67P46013 3256 aaKnown RBP13.51□□□□□ -0.25
CCDC3-202ENST00000378839 CABYRO75952 493 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 RPL14P50914 215 aaKnown RBP13.51□□□□□ -0.25
CCDC3-202ENST00000378839 MUM1Q2TAK8 710 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 CMPK2Q5EBM0 449 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 RAP1GAP2Q684P5 730 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 CCDC117Q8IWD4 279 aaPredicted RBP13.51□□□□□ -0.25
CCDC3-202ENST00000378839 DEFB107AQ8IZN7 70 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 ARHGAP24Q8N264 748 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 ARRDC2Q8TBH0 407 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 ANKRD49Q8WVL7 239 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 PABPC5Q96DU9 382 aaKnown RBP13.51□□□□□ -0.25
CCDC3-202ENST00000378839 C8orf48Q96LL4 319 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 SLC25A51Q9H1U9 297 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 MRM3Q9HC36 420 aaKnown RBP13.51□□□□□ -0.25
CCDC3-202ENST00000378839 TCF7L2Q9NQB0 619 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 IL37Q9NZH6 218 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 MARCH4Q9P2E8 410 aaPredicted RBP13.51□□□□□ -0.25
CCDC3-202ENST00000378839 BUD23O43709 281 aaKnown RBP13.5□□□□□ -0.25
CCDC3-202ENST00000378839 CCNT2O60583 730 aaKnown RBP13.5□□□□□ -0.25
CCDC3-202ENST00000378839 STMN1P16949 149 aa13.5□□□□□ -0.25
CCDC3-202ENST00000378839 HTR7P34969 479 aa13.5□□□□□ -0.25
CCDC3-202ENST00000378839 ACVRL1P37023 503 aa13.5□□□□□ -0.25
CCDC3-202ENST00000378839 CUL3Q13618 768 aa13.5□□□□□ -0.25
CCDC3-202ENST00000378839 TCHHL1Q5QJ38 904 aaPredicted RBP13.5□□□□□ -0.25
CCDC3-202ENST00000378839 NADSYN1Q6IA69 706 aa13.5□□□□□ -0.25
CCDC3-202ENST00000378839 KIAA0930Q6ICG6 404 aaPredicted RBP13.5□□□□□ -0.25
CCDC3-202ENST00000378839 NEPROQ6NW34 567 aa13.5□□□□□ -0.25
CCDC3-202ENST00000378839 ACTRT2Q8TDY3 377 aa13.5□□□□□ -0.25
CCDC3-202ENST00000378839 CCDC124Q96CT7 223 aaKnown RBP13.5□□□□□ -0.25
CCDC3-202ENST00000378839 ANKRD27Q96NW4 1050 aa13.5□□□□□ -0.25
CCDC3-202ENST00000378839 TTC1Q99614 292 aa13.5□□□□□ -0.25
CCDC3-202ENST00000378839 ARNT2Q9HBZ2 717 aa13.5□□□□□ -0.25
CCDC3-202ENST00000378839 IGLV3-10A0A075B6K4 115 aa13.5□□□□□ -0.25
CCDC3-202ENST00000378839 AP3B1O00203 1094 aa13.5□□□□□ -0.25
CCDC3-202ENST00000378839 MAP3K13O43283 966 aa13.5□□□□□ -0.25
CCDC3-202ENST00000378839 MYL4P12829 197 aa13.5□□□□□ -0.25
CCDC3-202ENST00000378839 DNAJB2P25686 324 aa13.5□□□□□ -0.25
CCDC3-202ENST00000378839 ETFBP38117 255 aa13.5□□□□□ -0.25
CCDC3-202ENST00000378839 HADHAP40939 763 aa13.5□□□□□ -0.25
CCDC3-202ENST00000378839 KCNC1P48547 511 aa13.5□□□□□ -0.25
CCDC3-202ENST00000378839 ARPP19P56211 112 aa13.5□□□□□ -0.25
CCDC3-202ENST00000378839 TIGD7Q6NT04 549 aaPredicted RBP13.5□□□□□ -0.25
CCDC3-202ENST00000378839 TMEM173Q86WV6 379 aaPredicted RBP13.5□□□□□ -0.25
CCDC3-202ENST00000378839 KDM1BQ8NB78 822 aa13.5□□□□□ -0.25
CCDC3-202ENST00000378839 TADA1Q96BN2 335 aa13.5□□□□□ -0.25
CCDC3-202ENST00000378839 TMEM248Q9NWD8 314 aa13.5□□□□□ -0.25
CCDC3-202ENST00000378839 NSMCE4AQ9NXX6 385 aa13.5□□□□□ -0.25
CCDC3-202ENST00000378839 TMEM189-UBE2V1I3L0A0 370 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 ATXN1LP0C7T5 689 aaKnown RBP13.49□□□□□ -0.25
CCDC3-202ENST00000378839 ITKQ08881 620 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 SREBF2Q12772 1141 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 HNRNPDQ14103 355 aaKnown RBP13.49□□□□□ -0.25
CCDC3-202ENST00000378839 MRPL58Q14197 206 aaKnown RBP13.49□□□□□ -0.25
CCDC3-202ENST00000378839 CFAP157Q5JU67 520 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 SIRPB2Q5JXA9 342 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 AP1ARQ63HQ0 302 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 TAS1R1Q7RTX1 841 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 OR52K2Q8NGK3 314 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 RDH11Q8TC12 318 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 ZYG11BQ9C0D3 744 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.49□□□□□ -0.25
CCDC3-202ENST00000378839 IRAK4Q9NWZ3 460 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 SSX2IPQ9Y2D8 614 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 FAM92AA1XBS5 289 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 A6NHS1 94 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 HDAC3O15379 428 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 EOMESO95936 686 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 SKIP12755 728 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 HNRNPLP14866 589 aaKnown RBP eCLIP13.49□□□□□ -0.25
CCDC3-202ENST00000378839 RHOQP17081 205 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 PIK3R1P27986 724 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 CD151P48509 253 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 CDKN2DP55273 166 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 TAF10Q12962 218 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 FAM171A1Q5VUB5 890 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 RNF19BQ6ZMZ0 732 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 RNF135Q8IUD6 432 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 TEX26Q8N6G2 289 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 CCSER2Q9H7U1 834 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 MARCH5Q9NX47 278 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 MIA3Q5JRA6 1907 aa13.49□□□□□ -0.25
CCDC3-202ENST00000378839 CPB1P15086 417 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 TIAL1Q01085 375 aaKnown RBP eCLIP13.48□□□□□ -0.25
CCDC3-202ENST00000378839 CSHL1Q14406 222 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 PDCD2Q16342 344 aaPredicted RBP13.48□□□□□ -0.25
CCDC3-202ENST00000378839 CTXN3Q4LDR2 81 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 TMCO4Q5TGY1 634 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 CAPRIN2Q6IMN6 1127 aaKnown RBP13.48□□□□□ -0.25
CCDC3-202ENST00000378839 PTAR1Q7Z6K3 402 aaPredicted RBP13.48□□□□□ -0.25
CCDC3-202ENST00000378839 CCNYL1Q8N7R7 359 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 PTCD2Q8WV60 388 aaKnown RBP13.48□□□□□ -0.25
CCDC3-202ENST00000378839 CATSPER2Q96P56 530 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms