RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 VPS26BQ4G0F5 336 aa6.6□□□□□ -1.35
SMC1A-202ENST00000375340 PLPPR4Q7Z2D5 763 aa6.6□□□□□ -1.35
SMC1A-202ENST00000375340 LMO3Q8TAP4 145 aa6.6□□□□□ -1.35
SMC1A-202ENST00000375340 ADAM7Q9H2U9 754 aa6.6□□□□□ -1.35
SMC1A-202ENST00000375340 TMEM165Q9HC07 324 aa6.6□□□□□ -1.35
SMC1A-202ENST00000375340 GPBP1L1Q9HC44 474 aaPredicted RBP6.6□□□□□ -1.35
SMC1A-202ENST00000375340 MRGBPQ9NV56 204 aa6.6□□□□□ -1.35
SMC1A-202ENST00000375340 CACNA2D2Q9NY47 1150 aa6.6□□□□□ -1.35
SMC1A-202ENST00000375340 SH3BP1Q9Y3L3 701 aa6.6□□□□□ -1.35
SMC1A-202ENST00000375340 A0A087WXM4 84 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 RHOAP61586 193 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 MILR1Q7Z6M3 343 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 P3H2Q8IVL5 708 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 PCDH19Q8TAB3 1148 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 MFSD3Q96ES6 412 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 TXLNGYQ9BZA5 131 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 REXO4Q9GZR2 422 aaKnown RBP6.59□□□□□ -1.35
SMC1A-202ENST00000375340 SPASTQ9UBP0 616 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 KDM4FA0A1W2PPD8 638 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 HDAC3O15379 428 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 HALP42357 657 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 CHRNA4P43681 627 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 NR1H2P55055 460 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 SLC25A52Q3SY17 297 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 TAS1R3Q7RTX0 852 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 OFCC1Q8IZS5 231 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 FAM47BQ8NA70 645 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 UTP15Q8TED0 518 aaKnown RBP6.59□□□□□ -1.35
SMC1A-202ENST00000375340 SLCO2A1Q92959 643 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 EXOC2Q96KP1 924 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 ZFP14Q9HCL3 533 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 GNG14A0A1W2PPG7 69 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 CCDC189A1A4V9 331 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 STX16-NPEPL1H3BU86 382 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 LRATO95237 230 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 CYP4F2P78329 520 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 ALDH6A1Q02252 535 aaKnown RBP6.59□□□□□ -1.35
SMC1A-202ENST00000375340 CYP4F3Q08477 520 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 DMPKQ09013 629 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 DPYSQ14117 519 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 TMEM198Q66K66 360 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 RPS27LQ71UM5 84 aaKnown RBP6.59□□□□□ -1.35
SMC1A-202ENST00000375340 LENG8Q96PV6 779 aaPredicted RBP6.59□□□□□ -1.35
SMC1A-202ENST00000375340 POLR1BQ9H9Y6 1135 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 ENTPD7Q9NQZ7 604 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 LMCD1Q9NZU5 365 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 ZNF180Q9UJW8 692 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 IPPQ9Y573 584 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 PDZK1P1A8MUH7 402 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 B4GALT4O60513 344 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 HOXC6P09630 235 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 ERCC2P18074 760 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 ATP5F1P24539 256 aaPredicted RBP6.59□□□□□ -1.35
SMC1A-202ENST00000375340 PTPN3P26045 913 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 KLF1Q13351 362 aaPredicted RBP6.59□□□□□ -1.35
SMC1A-202ENST00000375340 LCLAT1Q6UWP7 414 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 ABRAXAS1Q6UWZ7 409 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 RDH11Q8TC12 318 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 MOCOSQ96EN8 888 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 MAGED4Q96JG8 741 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 MTG1Q9BT17 334 aaPredicted RBP6.59□□□□□ -1.35
SMC1A-202ENST00000375340 OSBPL11Q9BXB4 747 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 RAB26Q9ULW5 256 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 TDRKHQ9Y2W6 561 aaKnown RBP6.59□□□□□ -1.35
SMC1A-202ENST00000375340 VPS4BO75351 444 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 HGFP14210 728 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 GMPRP36959 345 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 ZC3H12BQ5HYM0 836 aaKnown RBP6.59□□□□□ -1.35
SMC1A-202ENST00000375340 FAM126BQ8IXS8 530 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 C8orf59Q8N0T1 100 aaPredicted RBP6.59□□□□□ -1.35
SMC1A-202ENST00000375340 TWNKQ96RR1 684 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 TCF12Q99081 682 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 ST6GALNAC4Q9H4F1 302 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 CLK4Q9HAZ1 481 aaKnown RBP6.59□□□□□ -1.35
SMC1A-202ENST00000375340 PIDD1Q9HB75 910 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 TLR8Q9NR97 1041 aaKnown RBP6.59□□□□□ -1.35
SMC1A-202ENST00000375340 USE1Q9NZ43 259 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 CNTNAP1P78357 1384 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 DHRS12A0PJE2 317 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 PAGE1O75459 146 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 BFSP2Q13515 415 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 LPIN1Q14693 890 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 SIX1Q15475 284 aaPredicted RBP6.59□□□□□ -1.35
SMC1A-202ENST00000375340 CLHC1Q8NHS4 586 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 NIFKQ9BYG3 293 aaKnown RBP6.59□□□□□ -1.35
SMC1A-202ENST00000375340 CAPN10Q9HC96 672 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 ADARB2Q9NS39 739 aaKnown RBP6.59□□□□□ -1.35
SMC1A-202ENST00000375340 IMPAD1Q9NX62 359 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 PSMD13Q9UNM6 376 aa6.59□□□□□ -1.35
SMC1A-202ENST00000375340 MYH9P35579 1960 aaKnown RBP6.59□□□□□ -1.35
SMC1A-202ENST00000375340 A0A0J9YYE9 177 aa6.59□□□□□ -1.36
SMC1A-202ENST00000375340 LINGO3P0C6S8 592 aa6.59□□□□□ -1.36
SMC1A-202ENST00000375340 MMP14P50281 582 aa6.59□□□□□ -1.36
SMC1A-202ENST00000375340 DDR2Q16832 855 aa6.59□□□□□ -1.36
SMC1A-202ENST00000375340 C1orf220Q5T0J3 134 aa6.59□□□□□ -1.36
SMC1A-202ENST00000375340 GCNT7Q6ZNI0 430 aa6.59□□□□□ -1.36
SMC1A-202ENST00000375340 DENND6AQ8IWF6 608 aa6.59□□□□□ -1.36
SMC1A-202ENST00000375340 ARHGEF4Q9NR80 690 aa6.59□□□□□ -1.36
SMC1A-202ENST00000375340 INVSQ9Y283 1065 aa6.59□□□□□ -1.36
SMC1A-202ENST00000375340 A0A1W2PQH9 124 aa6.59□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms