RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 NSUN2Q08J23 767 aaKnown RBP eCLIP9.28□□□□□ -0.92
UPF2-202ENST00000357604 SPANXN3Q5MJ09 141 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 NEK5Q6P3R8 708 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 LINGO4Q6UY18 593 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 USP30Q70CQ3 517 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 PHC3Q8NDX5 983 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 STAMBPL1Q96FJ0 436 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 ZSCAN32Q9NX65 697 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 GNPTGQ9UJJ9 305 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 TDRD15B5MCY1 1934 aaKnown RBP9.28□□□□□ -0.92
UPF2-202ENST00000357604 C16orf96A6NNT2 1141 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 DFNA5O60443 496 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 PDAP1Q13442 181 aaKnown RBP9.28□□□□□ -0.92
UPF2-202ENST00000357604 PCID2Q5JVF3 399 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 LDLRAP1Q5SW96 308 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 NRSN1Q8IZ57 195 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 FGF14Q92915 247 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 ZSWIM3Q96MP5 696 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 KLQ9UEF7 1012 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 CCL26Q9Y258 94 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 SIP14410 1827 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 C1orf232A0A0U1RR37 186 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 TOR1BO14657 336 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 RNGTTO60942 597 aaKnown RBP9.28□□□□□ -0.92
UPF2-202ENST00000357604 KRT38O76015 456 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 UQCRHP07919 91 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 SPAM1P38567 509 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 SESN2P58004 480 aaPredicted RBP9.28□□□□□ -0.92
UPF2-202ENST00000357604 IFI35P80217 286 aaPredicted RBP9.28□□□□□ -0.92
UPF2-202ENST00000357604 ZNF234Q14588 700 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 RHBDF2Q6PJF5 856 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 Q6ZNB5 142 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 PHYKPLQ8IUZ5 450 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 OR2T34Q8NGX1 318 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 CRISPLD1Q9H336 500 aa9.28□□□□□ -0.92
UPF2-202ENST00000357604 A0A087WUV0 522 aaPredicted RBP9.27□□□□□ -0.92
UPF2-202ENST00000357604 KHNYNO15037 678 aaKnown RBP9.27□□□□□ -0.92
UPF2-202ENST00000357604 PRAMEF12O95522 483 aa9.27□□□□□ -0.92
UPF2-202ENST00000357604 PGAM1P18669 254 aa9.27□□□□□ -0.92
UPF2-202ENST00000357604 NFKB1P19838 968 aa9.27□□□□□ -0.92
UPF2-202ENST00000357604 LPOP22079 712 aaPredicted RBP9.27□□□□□ -0.92
UPF2-202ENST00000357604 SERPINB9P50453 376 aa9.27□□□□□ -0.92
UPF2-202ENST00000357604 PLTPP55058 493 aa9.27□□□□□ -0.92
UPF2-202ENST00000357604 RBM10P98175 930 aaKnown RBP9.27□□□□□ -0.92
UPF2-202ENST00000357604 PDIA2Q13087 525 aaKnown RBP9.27□□□□□ -0.92
UPF2-202ENST00000357604 GALNT13Q8IUC8 556 aa9.27□□□□□ -0.92
UPF2-202ENST00000357604 HES6Q96HZ4 224 aa9.27□□□□□ -0.92
UPF2-202ENST00000357604 HHIPQ96QV1 700 aa9.27□□□□□ -0.92
UPF2-202ENST00000357604 RBM15Q96T37 977 aaKnown RBP eCLIP9.27□□□□□ -0.925e-10■■■■■ 33.7
UPF2-202ENST00000357604 IL22Q9GZX6 179 aa9.27□□□□□ -0.92
UPF2-202ENST00000357604 KCNH6Q9H252 994 aa9.27□□□□□ -0.92
UPF2-202ENST00000357604 ZFYVE1Q9HBF4 777 aa9.27□□□□□ -0.92
UPF2-202ENST00000357604 C20orf96Q9NUD7 363 aaPredicted RBP9.27□□□□□ -0.92
UPF2-202ENST00000357604 WHRNQ9P202 907 aa9.27□□□□□ -0.92
UPF2-202ENST00000357604 FZD4Q9ULV1 537 aa9.27□□□□□ -0.92
UPF2-202ENST00000357604 DMTF1Q9Y222 760 aa9.27□□□□□ -0.92
UPF2-202ENST00000357604 SNX10Q9Y5X0 201 aa9.27□□□□□ -0.92
UPF2-202ENST00000357604 A6NNZ2 444 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 PENKP01210 267 aaPredicted RBP9.27□□□□□ -0.93
UPF2-202ENST00000357604 HOXD9P28356 352 aaPredicted RBP9.27□□□□□ -0.93
UPF2-202ENST00000357604 RABIFP47224 123 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 SLC25A11Q02978 314 aaKnown RBP9.27□□□□□ -0.93
UPF2-202ENST00000357604 TSTA3Q13630 321 aaPredicted RBP9.27□□□□□ -0.93
UPF2-202ENST00000357604 NAA25Q14CX7 972 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 KIAA0895LQ68EN5 471 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 PYROXD2Q8N2H3 581 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 KLHDC7BQ96G42 594 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 NLNQ9BYT8 704 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 SUDS3Q9H7L9 328 aaPredicted RBP9.27□□□□□ -0.93
UPF2-202ENST00000357604 FANCEQ9HB96 536 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 GDF3Q9NR23 364 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 VPS26AO75436 327 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 SLC6A11P48066 632 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 GALNT2Q10471 571 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 MMRN1Q13201 1228 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 LRRC14Q15048 493 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 HNRNPA1L2Q32P51 320 aaKnown RBP9.27□□□□□ -0.93
UPF2-202ENST00000357604 POM121L1PQ3SYA9 428 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 FYB2Q5VWT5 728 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 TMPRSS6Q8IU80 811 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 IGSF8Q969P0 613 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 TTC17Q96AE7 1141 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 RPL10LQ96L21 214 aaKnown RBP9.27□□□□□ -0.93
UPF2-202ENST00000357604 TSGA13Q96PP4 275 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 DRC3Q9H069 523 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 ETNK2Q9NVF9 386 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 VPS51Q9UID3 782 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 SLC39A10Q9ULF5 831 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 ATP8A1Q9Y2Q0 1164 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 RGSL1A5PLK6 1076 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 LIASO43766 372 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 OLFM2O95897 454 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 CD70P32970 193 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 CDKN2BP42772 138 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 RPS9P46781 194 aaKnown RBP9.27□□□□□ -0.93
UPF2-202ENST00000357604 Q6ZVU0 165 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 RD3Q7Z3Z2 195 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 PJA1Q8NG27 643 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 SPASTQ9UBP0 616 aa9.27□□□□□ -0.93
UPF2-202ENST00000357604 TRIM10Q9UDY6 481 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms