RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 NFE2Q16621 373 aaPredicted RBP10.44□□□□□ -0.74
LIMA1-201ENST00000341247 FAM91A1Q658Y4 838 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 TAS1R1Q7RTX1 841 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 PIM3Q86V86 326 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 SNX32Q86XE0 403 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 UCMAQ8WVF2 138 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 SMIM14Q96QK8 99 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 NACA2Q9H009 215 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 POMKQ9H5K3 350 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 OAZ2O95190 189 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 PRSS56P0CW18 603 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 COX4I1P13073 169 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 PAMP19021 973 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 SERPINH1P50454 418 aaKnown RBP10.44□□□□□ -0.74
LIMA1-201ENST00000341247 NUDT2P50583 147 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 RENBPP51606 427 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 PRAMEP78395 509 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 SP3Q02447 781 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 POLD3Q15054 466 aaPredicted RBP10.44□□□□□ -0.74
LIMA1-201ENST00000341247 SH2D4BQ5SQS7 431 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 POTEHQ6S545 545 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 KBTBD2Q8IY47 623 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 PGBD5Q8N414 524 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 TXNDC5Q8NBS9 432 aaKnown RBP10.44□□□□□ -0.74
LIMA1-201ENST00000341247 RAET1EQ8TD07 263 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 CYP2S1Q96SQ9 504 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 SEMA3CQ99985 751 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 MCMBPQ9BTE3 642 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 MMADHCQ9H3L0 296 aaPredicted RBP10.44□□□□□ -0.74
LIMA1-201ENST00000341247 FBXO44Q9H4M3 255 aa10.44□□□□□ -0.74
LIMA1-201ENST00000341247 MARCH4Q9P2E8 410 aaPredicted RBP10.44□□□□□ -0.74
LIMA1-201ENST00000341247 MYO15AQ9UKN7 3530 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 A0A0D9SEW6 157 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 ARHGEF37A1IGU5 675 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 CACNG3O60359 315 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 RAMP2O60895 175 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 CCDC166P0CW27 439 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 ITGAXP20702 1163 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 HOXC13P31276 330 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 RAP1GDS1P52306 607 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 TBL3Q12788 808 aaKnown RBP10.43□□□□□ -0.74
LIMA1-201ENST00000341247 ASPHQ12797 758 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 UGP2Q16851 508 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 FBXO48Q5FWF7 155 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 RTP2Q5QGT7 225 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 USP13Q92995 863 aaPredicted RBP10.43□□□□□ -0.74
LIMA1-201ENST00000341247 GPAMQ9HCL2 828 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 ARL5AQ9Y689 179 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 VCANP13611 3396 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 A0A0U1RQS6 177 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 PEX11BO96011 259 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 ANPEPP15144 967 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 DBN1Q16643 649 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 TSTD2Q5T7W7 516 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 KDELC1Q6UW63 502 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 PPFIBP2Q8ND30 876 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 OR6Y1Q8NGX8 325 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 SH3TC2Q8TF17 1288 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 SLC39A13Q96H72 371 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 ZNF333Q96JL9 665 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 TBATAQ96M53 351 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 PPP1R12CQ9BZL4 782 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 SLC25A51Q9H1U9 297 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 TREX1Q9NSU2 369 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 STX18Q9P2W9 335 aaKnown RBP10.43□□□□□ -0.74
LIMA1-201ENST00000341247 LRRC42Q9Y546 428 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 MUSKO15146 869 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 TLR5O60602 858 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 CAPN15O75808 1086 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 TCN1P20061 433 aaPredicted RBP10.43□□□□□ -0.74
LIMA1-201ENST00000341247 PKNOX1P55347 436 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 ACTR3P61158 418 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 TBCCQ15814 346 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 SIRPB2Q5JXA9 342 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 NET1Q7Z628 596 aaPredicted RBP10.43□□□□□ -0.74
LIMA1-201ENST00000341247 LGI2Q8N0V4 545 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 LSMEM2Q8N112 164 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 SCML4Q8N228 414 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 OR7D4Q8NG98 312 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 STYXQ8WUJ0 223 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 ANKRD49Q8WVL7 239 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 BHMTQ93088 406 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 CMTM5Q96DZ9 223 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 UBE2OQ9C0C9 1292 aaKnown RBP10.43□□□□□ -0.74
LIMA1-201ENST00000341247 DRC3Q9H069 523 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 NSMCE4AQ9NXX6 385 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 RAP2CQ9Y3L5 183 aa10.43□□□□□ -0.74
LIMA1-201ENST00000341247 MATN2O00339 956 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 HDAC3O15379 428 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 ADAM12O43184 909 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 CABYRO75952 493 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 IRF1P10914 325 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 ENO3P13929 434 aaPredicted RBP10.42□□□□□ -0.74
LIMA1-201ENST00000341247 HDCP19113 662 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 SLC11A1P49279 550 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 HNRNPDQ14103 355 aaKnown RBP10.42□□□□□ -0.74
LIMA1-201ENST00000341247 TRMT5Q32P41 509 aaKnown RBP10.42□□□□□ -0.74
LIMA1-201ENST00000341247 ANO7Q6IWH7 933 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 TRIM67Q6ZTA4 783 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 ATP6V0D2Q8N8Y2 350 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms