RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 NPM3O75607 178 aaKnown RBP8.76□□□□□ -1.01
RTN3-202ENST00000339997 IL12AP29459 219 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 RENBPP51606 427 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 POU5F1Q01860 360 aaKnown RBP8.76□□□□□ -1.01
RTN3-202ENST00000339997 PTPRNQ16849 979 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 SPANXN3Q5MJ09 141 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 BROXQ5VW32 411 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 TRMT10BQ6PF06 316 aaKnown RBP8.76□□□□□ -1.01
RTN3-202ENST00000339997 PACS1Q6VY07 963 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 SYT12Q8IV01 421 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 GPRC5AQ8NFJ5 357 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 LRTOMTQ8WZ04 291 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 ART5Q96L15 291 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 ZDHHC15Q96MV8 337 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 TUBGCP5Q96RT8 1024 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 CDH22Q9UJ99 828 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 GGA2Q9UJY4 613 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 KIAA1257Q9ULG3 409 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 TTLL13PA6NNM8 815 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 TK2O00142 265 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 AXIN1O15169 862 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 TRUB2O95900 331 aaKnown RBP8.76□□□□□ -1.01
RTN3-202ENST00000339997 FTH1P02794 183 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 IL6P05231 212 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 BPGMP07738 259 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 PNPLA4P41247 253 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 WDR4P57081 412 aaKnown RBP8.76□□□□□ -1.01
RTN3-202ENST00000339997 PHKG1Q16816 387 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 OVOS1Q6IE37 1185 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 PSTKQ8IV42 348 aaKnown RBP8.76□□□□□ -1.01
RTN3-202ENST00000339997 PHACTR4Q8IZ21 702 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 UNC5BQ8IZJ1 945 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 DSELQ8IZU8 1212 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 HDAC10Q969S8 669 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 B3GALT6Q96L58 329 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 KLHL32Q96NJ5 620 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 TBCBQ99426 244 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 ACAT2Q9BWD1 397 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 CRISPLD1Q9H336 500 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 KCNMB3Q9NPA1 279 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 ZNF222Q9UK12 451 aa8.76□□□□□ -1.01
RTN3-202ENST00000339997 MYOCOSA0A1B0GUC4 107 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 STX16-NPEPL1H3BU86 382 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 TRIM38O00635 465 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 CRABP2P29373 138 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 MXD1Q05195 221 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 ITGA7Q13683 1181 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 ARL13AQ5H913 290 aaPredicted RBP8.75□□□□□ -1.01
RTN3-202ENST00000339997 APOBEC3HQ6NTF7 200 aaKnown RBP8.75□□□□□ -1.01
RTN3-202ENST00000339997 TMEM214Q6NUQ4 689 aaKnown RBP8.75□□□□□ -1.01
RTN3-202ENST00000339997 DOK6Q6PKX4 331 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 TPGS1Q6ZTW0 290 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 TBC1D19Q8N5T2 526 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 VGLL2Q8N8G2 317 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 C4orf32Q8N8J7 132 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 OR56A4Q8NGH8 313 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 OR52J3Q8NH60 311 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 TSSK3Q96PN8 268 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 VPS35Q96QK1 796 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 CPXM1Q96SM3 734 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 EBF2Q9HAK2 575 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 GOLGA2P5Q9HBQ8 144 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 AJAP1Q9UKB5 411 aaPredicted RBP8.75□□□□□ -1.01
RTN3-202ENST00000339997 ZNF536O15090 1300 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 RPTORQ8N122 1335 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 RGPD2P0DJD1 1756 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 J3QRK9 145 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 IFRD1O00458 451 aaPredicted RBP8.75□□□□□ -1.01
RTN3-202ENST00000339997 PSMD10O75832 226 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 TM7SF2O76062 418 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 RECQL4O94761 1208 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 COX7A2P14406 83 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 ADSSP30520 456 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 CDK7P50613 346 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 ACSM2AQ08AH3 577 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 FUT2Q10981 343 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 GRIK3Q13003 919 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 PARP6Q2NL67 630 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 MFSD14CQ5VZR4 134 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 ACSM2BQ68CK6 577 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 TIGD7Q6NT04 549 aaPredicted RBP8.75□□□□□ -1.01
RTN3-202ENST00000339997 BBS12Q6ZW61 710 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 KRT74Q7RTS7 529 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 ANKS1BQ7Z6G8 1248 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 LGI2Q8N0V4 545 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 RAB42Q8N4Z0 105 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 TERB1Q8NA31 727 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 NAT14Q8WUY8 206 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 CPT1BQ92523 772 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 FBXL8Q96CD0 374 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 P2RY11Q96G91 374 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 FEM1AQ9BSK4 669 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 CACNG4Q9UBN1 327 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 FBXO5Q9UKT4 447 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 CNOT6Q9ULM6 557 aaKnown RBP8.75□□□□□ -1.01
RTN3-202ENST00000339997 SAMHD1Q9Y3Z3 626 aaKnown RBP8.75□□□□□ -1.01
RTN3-202ENST00000339997 HBS1LQ9Y450 684 aaKnown RBP8.75□□□□□ -1.01
RTN3-202ENST00000339997 CENPXA8MT69 81 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 BIRC5O15392 142 aa8.75□□□□□ -1.01
RTN3-202ENST00000339997 GGT5P36269 586 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms