RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 NLNQ9BYT8 704 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 SPRTNQ9H040 489 aaPredicted RBP10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 HSD3B7Q9H2F3 369 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 PADI4Q9UM07 663 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 TLL2Q9Y6L7 1015 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 DYNC1LI2O43237 492 aaPredicted RBP10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 ZBTB14O43829 449 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 ECDO95905 644 aaPredicted RBP10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 INSRRP14616 1297 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 PABPC1LQ4VXU2 614 aaKnown RBP10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 GALNT18Q6P9A2 607 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 MPP5Q8N3R9 675 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 NAT14Q8WUY8 206 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 IRGQQ8WZA9 623 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 SLC9A7Q96T83 725 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 SMPD3Q9NY59 655 aaPredicted RBP10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 PHLPP1O60346 1717 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 BTN3A1O00481 513 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 EPHB6O15197 1021 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 CNPP09543 421 aaKnown RBP10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 GPC1P35052 558 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 GMPSP49915 693 aaPredicted RBP10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 NAGLUP54802 743 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 GRIK3Q13003 919 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 SMAD1Q15797 465 aaKnown RBP10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 ARSHQ5FYA8 562 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 IQSEC1Q6DN90 963 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 DSG4Q86SJ6 1040 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 RASSF5Q8WWW0 418 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 ZHX1-C8orf76Q96EF9 292 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 PHF21BQ96EK2 531 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 NDNQ99608 321 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 ING3Q9NXR8 418 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 IPPQ9Y573 584 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 NPHS1O60500 1241 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 CALCAP01258 141 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 PRKAR1AP10644 381 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 MZF1P28698 734 aaPredicted RBP10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 ASMTP46597 345 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 TAF1CQ15572 869 aaPredicted RBP10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 DCLRE1AQ6PJP8 1040 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 ZYG11AQ6WRX3 759 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 MCRS1Q96EZ8 462 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 SLC4A5Q9BY07 1137 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 FHDC1Q9C0D6 1143 aaPredicted RBP10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 EBF2Q9HAK2 575 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 PTBP2Q9UKA9 531 aaKnown RBP10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 ARIH1Q9Y4X5 557 aaPredicted RBP10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 PCDHB12Q9Y5F1 795 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 SERPINA4P29622 427 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 TRIM25Q14258 630 aaKnown RBP10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 PTAR1Q7Z6K3 402 aaPredicted RBP10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 AKAP14Q86UN6 197 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 GLB1L3Q8NCI6 653 aaPredicted RBP10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 CYP2W1Q8TAV3 490 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 CENPNQ96H22 339 aaPredicted RBP10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 TMEM169Q96HH4 297 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 TEFMQ96QE5 360 aaKnown RBP10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 FAM53CQ9NYF3 392 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 NRP2O60462 931 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 OR1G1P47890 313 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 PFKFB4Q16877 469 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 TATDN1Q6P1N9 297 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 SLC30A10Q6XR72 485 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 FAM183BPQ6ZVS7 135 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 SLC26A9Q7LBE3 791 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 ZNF438Q7Z4V0 828 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 ADCK2Q7Z695 626 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 TLK2Q86UE8 772 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 FITM2Q8N6M3 262 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 PIK3C3Q8NEB9 887 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 ING4Q9UNL4 249 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 CCL15-CCL14A0A0B4J2E2 113 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 AZIN1O14977 448 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 CCL15Q16663 113 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 ASTE1Q2TB18 679 aaPredicted RBP10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 B3GALNT2Q8NCR0 500 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 GLT1D1Q96MS3 346 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 COQ7Q99807 217 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 DUSP16Q9BY84 665 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 ADARB2Q9NS39 739 aaKnown RBP10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 ZNF510Q9Y2H8 683 aa10.36□□□□□ -0.75
CCDC88A-202ENST00000336838 EVPLQ92817 2033 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 TGFB1I1O43294 461 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 PPATQ06203 517 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 CTXN3Q4LDR2 81 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 ECHDC2Q86YB7 292 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 UTP15Q8TED0 518 aaKnown RBP10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 COX4I2Q96KJ9 171 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 ZYG11BQ9C0D3 744 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 REXO4Q9GZR2 422 aaKnown RBP10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 UNC93B1Q9H1C4 597 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 RNPEPQ9H4A4 650 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 ANXA5P08758 320 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 PTPN9P43378 593 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 EFEMP1Q12805 493 aa10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 PTGES3Q15185 160 aaKnown RBP10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 EIF3MQ7L2H7 374 aaKnown RBP10.35□□□□□ -0.75
CCDC88A-202ENST00000336838 WDR36Q8NI36 951 aaKnown RBP10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms