RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 POLR1EQ9GZS1 481 aaKnown RBP16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 SUV39H2Q9H5I1 410 aa16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 NOD2Q9HC29 1040 aa16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 HAUS2Q9NVX0 235 aa16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 PYCARDQ9ULZ3 195 aa16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 PCDHGA5Q9Y5G8 931 aa16.07■□□□□ 0.16
CCDC28A-201ENST00000332797 GPR179Q6PRD1 2367 aa16.06■□□□□ 0.16
CCDC28A-201ENST00000332797 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.06■□□□□ 0.16
CCDC28A-201ENST00000332797 CR2P20023 1033 aa16.06■□□□□ 0.16
CCDC28A-201ENST00000332797 MAOBP27338 520 aa16.06■□□□□ 0.16
CCDC28A-201ENST00000332797 ABL2P42684 1182 aa16.06■□□□□ 0.16
CCDC28A-201ENST00000332797 PPP2CBP62714 309 aa16.06■□□□□ 0.16
CCDC28A-201ENST00000332797 PPP2CAP67775 309 aa16.06■□□□□ 0.16
CCDC28A-201ENST00000332797 OTUD4Q01804 1114 aaKnown RBP16.06■□□□□ 0.16
CCDC28A-201ENST00000332797 SPEM2Q0P670 501 aa16.06■□□□□ 0.16
CCDC28A-201ENST00000332797 NOMO1Q15155 1222 aa16.06■□□□□ 0.16
CCDC28A-201ENST00000332797 LRRC73Q5JTD7 316 aa16.06■□□□□ 0.16
CCDC28A-201ENST00000332797 FAM182AQ5T1J6 154 aa16.06■□□□□ 0.16
CCDC28A-201ENST00000332797 ALYREFQ86V81 257 aaKnown RBP16.06■□□□□ 0.16
CCDC28A-201ENST00000332797 ACTL9Q8TC94 416 aa16.06■□□□□ 0.16
CCDC28A-201ENST00000332797 BIRC7Q96CA5 298 aa16.06■□□□□ 0.16
CCDC28A-201ENST00000332797 NSMCE3Q96MG7 304 aa16.06■□□□□ 0.16
CCDC28A-201ENST00000332797 ZNF641Q96N77 438 aaPredicted RBP16.06■□□□□ 0.16
CCDC28A-201ENST00000332797 QKIQ96PU8 341 aaKnown RBP eCLIP16.06■□□□□ 0.16
CCDC28A-201ENST00000332797 IL12RB2Q99665 862 aa16.06■□□□□ 0.16
CCDC28A-201ENST00000332797 SEMA3CQ99985 751 aa16.06■□□□□ 0.16
CCDC28A-201ENST00000332797 FAM118BQ9BPY3 351 aa16.06■□□□□ 0.16
CCDC28A-201ENST00000332797 MIR1-1HGQ9H1L0 117 aa16.06■□□□□ 0.16
CCDC28A-201ENST00000332797 KDM4CQ9H3R0 1056 aa16.06■□□□□ 0.16
CCDC28A-201ENST00000332797 DKK3Q9UBP4 350 aa16.06■□□□□ 0.16
CCDC28A-201ENST00000332797 AMACRQ9UHK6 382 aa16.06■□□□□ 0.16
CCDC28A-201ENST00000332797 GOLGA6L9A6NEM1 432 aa16.05■□□□□ 0.16
CCDC28A-201ENST00000332797 H7C0C1 242 aa16.05■□□□□ 0.16
CCDC28A-201ENST00000332797 KCNK3O14649 394 aa16.05■□□□□ 0.16
CCDC28A-201ENST00000332797 IGHV4-34P06331 123 aa16.05■□□□□ 0.16
CCDC28A-201ENST00000332797 XPAP23025 273 aaPredicted RBP16.05■□□□□ 0.16
CCDC28A-201ENST00000332797 ATP5OP48047 213 aa16.05■□□□□ 0.16
CCDC28A-201ENST00000332797 DSC2Q02487 901 aa16.05■□□□□ 0.16
CCDC28A-201ENST00000332797 RALGPS1Q5JS13 557 aa16.05■□□□□ 0.16
CCDC28A-201ENST00000332797 TTC7BQ86TV6 843 aa16.05■□□□□ 0.16
CCDC28A-201ENST00000332797 SYT12Q8IV01 421 aa16.05■□□□□ 0.16
CCDC28A-201ENST00000332797 SMOC1Q9H4F8 434 aa16.05■□□□□ 0.16
CCDC28A-201ENST00000332797 PREBQ9HCU5 417 aa16.05■□□□□ 0.16
CCDC28A-201ENST00000332797 TMEM74BQ9NUR3 256 aa16.05■□□□□ 0.16
CCDC28A-201ENST00000332797 EIF2B4Q9UI10 523 aaKnown RBP16.05■□□□□ 0.16
CCDC28A-201ENST00000332797 PILRBQ9UKJ0 227 aa16.05■□□□□ 0.16
CCDC28A-201ENST00000332797 ITM2BQ9Y287 266 aa16.05■□□□□ 0.16
CCDC28A-201ENST00000332797 ANKRD36A6QL64 1941 aa16.05■□□□□ 0.16
CCDC28A-201ENST00000332797 SDK1Q7Z5N4 2213 aa16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 TSPAN11A1L157 253 aa16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 USP27XA6NNY8 438 aa16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 HACD1B0YJ81 288 aa16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 NEMP1O14524 444 aa16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 RNGTTO60942 597 aaKnown RBP16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 PCDH8O95206 1070 aa16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 TIMP2P16035 220 aa16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 MAT2AP31153 395 aaKnown RBP16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 DPP6P42658 865 aa16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 CCR5P51681 352 aa16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 EIF3EP60228 445 aaKnown RBP16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 XRCC4Q13426 336 aa16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 SLC45A4Q5BKX6 768 aa16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 ZNF569Q5MCW4 686 aa16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 ALG1LQ6GMV1 187 aa16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 BRAT1Q6PJG6 821 aa16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 ZSWIM9Q86XI8 627 aa16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 HCAR2Q8TDS4 363 aa16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 PDCD6IPQ8WUM4 868 aaKnown RBP16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 RAB7BQ96AH8 199 aa16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 AGAP3Q96P47 875 aa16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 TLR10Q9BXR5 811 aa16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 CARD9Q9H257 536 aa16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 GGT7Q9UJ14 662 aa16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 ATP8A1Q9Y2Q0 1164 aa16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 PCDHGC4Q9Y5F7 938 aa16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 FADS3Q9Y5Q0 445 aa16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.04■□□□□ 0.16
CCDC28A-201ENST00000332797 TCRBV7S2A1N4TA0A589 114 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 UPK3BL1B0FP48 263 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 UPK3BL2E5RIL1 263 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 TRAFD1O14545 582 aaPredicted RBP16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 ENC1O14682 589 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 KIF5CO60282 957 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 LRP3O75074 770 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 SOCS5O75159 536 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 CES1P23141 567 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 PTPN3P26045 913 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 TRAF2Q12933 501 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 KLF1Q13351 362 aaPredicted RBP16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 PLA2G2CQ5R387 149 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 TRIM69Q86WT6 500 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 CDKL3Q8IVW4 592 aaPredicted RBP16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 SLC35F6Q8N357 371 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 ZCCHC9Q8N567 271 aaKnown RBP16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 CNTD1Q8N815 330 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 HTR3CQ8WXA8 447 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 DNASE2BQ8WZ79 361 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 C10orf88Q9H8K7 445 aa16.03■□□□□ 0.16
CCDC28A-201ENST00000332797 PARD6AQ9NPB6 346 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms