RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 CCNDBP1O95273 360 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 CLEC3BP05452 202 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 HOXB5P09067 269 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 ARSBP15848 533 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 SRD5A1P18405 259 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 PPP3CCP48454 512 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 HARS2P49590 506 aaKnown RBP3.52□□□□□ -1.85
HMGB1-201ENST00000326004 TMPRSS3P57727 454 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 ZP1P60852 638 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 RPL7AP62424 266 aaKnown RBP3.52□□□□□ -1.85
HMGB1-201ENST00000326004 FAM27E3Q08E93 113 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 RUNX2Q13950 521 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 RNPS1Q15287 305 aaKnown RBP3.52□□□□□ -1.85
HMGB1-201ENST00000326004 WASHC2DQ5SRD0 308 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 DCAF12L2Q5VW00 463 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 NUGGCQ68CJ6 796 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 TXNDC8Q6A555 127 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 CPLX2Q6PUV4 134 aaKnown RBP3.52□□□□□ -1.85
HMGB1-201ENST00000326004 COLCA1Q6ZS62 124 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 C1orf122Q6ZSJ8 110 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 SLC46A3Q7Z3Q1 461 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 PATL1Q86TB9 770 aaKnown RBP3.52□□□□□ -1.85
HMGB1-201ENST00000326004 PALB2Q86YC2 1186 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 KIAA2013Q8IYS2 634 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 TMEM199Q8N511 208 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 SMG7Q92540 1137 aaKnown RBP3.52□□□□□ -1.85
HMGB1-201ENST00000326004 INPP5DQ92835 1189 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 TMEM18Q96B42 140 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 VCPIP1Q96JH7 1222 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 GFM1Q96RP9 751 aaKnown RBP3.52□□□□□ -1.85
HMGB1-201ENST00000326004 RANBP17Q9H2T7 1088 aaKnown RBP3.52□□□□□ -1.85
HMGB1-201ENST00000326004 CATSPERBQ9H7T0 1116 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 PRKRIP1Q9H875 184 aaPredicted RBP3.52□□□□□ -1.85
HMGB1-201ENST00000326004 NCKIPSDQ9NZQ3 722 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 ORC3Q9UBD5 711 aaPredicted RBP3.52□□□□□ -1.85
HMGB1-201ENST00000326004 NDRG3Q9UGV2 375 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 A4GNTQ9UNA3 340 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 SRPRBQ9Y5M8 271 aaKnown RBP3.52□□□□□ -1.85
HMGB1-201ENST00000326004 RAI2Q9Y5P3 530 aa3.52□□□□□ -1.85
HMGB1-201ENST00000326004 NPIPB15A6NHN6 443 aaPredicted RBP3.51□□□□□ -1.85
HMGB1-201ENST00000326004 LRRC53A6NM62 1247 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 MS4A18H0YCH9 400 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 MTA2O94776 668 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 SCGB1D1O95968 90 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 MT-CYBP00156 380 aaPredicted RBP3.51□□□□□ -1.85
HMGB1-201ENST00000326004 PSG1P11464 419 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 GNLYP22749 145 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 MYF6P23409 242 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 DCTDP32321 178 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 BSGP35613 385 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 ENTPD1P49961 510 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 ST3GAL1Q11201 340 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 SIM2Q14190 667 aaPredicted RBP3.51□□□□□ -1.85
HMGB1-201ENST00000326004 LPIN1Q14693 890 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 HYIQ5T013 277 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 OTUD1Q5VV17 481 aaPredicted RBP3.51□□□□□ -1.85
HMGB1-201ENST00000326004 CDC73Q6P1J9 531 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 C4orf50Q6ZRC1 276 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 TRILQ7L0X0 811 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 TBC1D1Q86TI0 1168 aaPredicted RBP3.51□□□□□ -1.85
HMGB1-201ENST00000326004 LURAP1LQ8IV03 231 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 C7orf57Q8NEG2 295 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 CADM4Q8NFZ8 388 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 NEK9Q8TD19 979 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 SNAPC3Q92966 411 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 SIN3AQ96ST3 1273 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 YME1L1Q96TA2 773 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 HEMGNQ9BXL5 484 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 NPFFR1Q9GZQ6 430 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 LHPPQ9H008 270 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 USP44Q9H0E7 712 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 SMYD2Q9NRG4 433 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 PNMA2Q9UL42 364 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 SCINQ9Y6U3 715 aa3.51□□□□□ -1.85
HMGB1-201ENST00000326004 TRIP12Q14669 1992 aaPredicted RBP3.51□□□□□ -1.85
HMGB1-201ENST00000326004 A0A0U1RQF3 1178 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 RPS10-NUDT3A0A1W2PQS6 291 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 HSPB2A8KAH6 182 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 B4DGG1 531 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 KLRF2D3W0D1 207 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 USP17L23D6RBM5 183 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 H0YGN5 161 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 CHL1O00533 1208 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 ATP2C2O75185 946 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 TFP02787 698 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 CYP1A2P05177 515 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 CAPN3P20807 821 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 CHATP28329 748 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 CASP2P42575 452 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 KCNJ4P48050 445 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 RFX2P48378 723 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 CLCN5P51795 746 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 EFNA5P52803 228 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 RARSP54136 660 aaKnown RBP3.5□□□□□ -1.85
HMGB1-201ENST00000326004 P2RX3P56373 397 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 HDAC4P56524 1084 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 CLDN2P57739 230 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 DCAF7P61962 342 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 ADORA2A-AS1P86434 159 aa3.5□□□□□ -1.85
HMGB1-201ENST00000326004 PPATQ06203 517 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms