RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 PRKCEQ02156 737 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 CLINT1Q14677 625 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 AVPI1Q5T686 147 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 PLPP4Q5VZY2 271 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 PTRHD1Q6GMV3 140 aaKnown RBP7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 ZNF773Q6PK81 442 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 DNAJC14Q6Y2X3 702 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 GHDCQ8N2G8 530 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 NUP37Q8NFH4 326 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 LIPHQ8WWY8 451 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 SEPT5Q99719 369 aaPredicted RBP7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 CCNB1IP1Q9NPC3 277 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 GPRC5BQ9NZH0 403 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 DAGLAQ9Y4D2 1042 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 SH3TC1Q8TE82 1336 aa7.7□□□□□ -1.18
LIMCH1-201ENST00000313860 MAGEB17A8MXT2 336 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 HHLA1C9JL84 531 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 KCNN4O15554 427 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 SERPING1P05155 500 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 ERVK-10P10266 1014 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 TMPOP42166 694 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 GRK6P43250 576 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 ZNF136P52737 540 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 DYNLL1P63167 89 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 GPSM2P81274 684 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 CDK10Q15131 360 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 ATP6AP1LQ52LC2 224 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 LDHAL6AQ6ZMR3 332 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 SCUBE1Q8IWY4 988 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 OR4C5Q8NGB2 326 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 FERD3LQ96RJ6 166 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 MRPL47Q9HD33 250 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 SOHLH2Q9NX45 425 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 KIF14Q15058 1648 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 A0A1B0GVC2 190 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 hCG_1984214I3L0E3 225 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 APOC3P02656 99 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 PSKH1P11801 424 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 PGAM1P18669 254 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 ALAS2P22557 587 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 PBLDP30039 288 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 CAP2P40123 477 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 YAP1P46937 504 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 DMP1Q13316 513 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 CHI3L2Q15782 390 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 SMUG1Q53HV7 270 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 RNASEH2BQ5TBB1 312 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 PIK3R6Q5UE93 754 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 STYK1Q6J9G0 422 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 HSDL2Q6YN16 418 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 SLCO6A1Q86UG4 719 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 NT5DC4Q86YG4 428 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 ZNF713Q8N859 430 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 TANKQ92844 425 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 MRPL38Q96DV4 380 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 TMEM246Q9BRR3 403 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 COMMD4Q9H0A8 199 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 METTL5Q9NRN9 209 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 HOXC10Q9NYD6 342 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 COPS7AQ9UBW8 275 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 MALT1Q9UDY8 824 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 AKT3Q9Y243 479 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 SAMHD1Q9Y3Z3 626 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 RTEL1-TNFRSF6BF6WH68 1400 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 UGGT2Q9NYU1 1516 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 GNG14A0A1W2PPG7 69 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 C12orf71A8MTZ7 269 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 ATE1O95260 518 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 THP07101 528 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 IDH2P48735 452 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 HABP2Q14520 560 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 LONRF1Q17RB8 773 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 C10orf62Q5T681 223 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 HEPHL1Q6MZM0 1159 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 MAMDC4Q6UXC1 1216 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 GALNT13Q8IUC8 556 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 SPARTQ8N0X7 666 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 MCFD2Q8NI22 146 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 ZNF419Q96HQ0 510 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 RADILQ96JH8 1075 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 PELOQ9BRX2 385 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 PRMT7Q9NVM4 692 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 GSKIPQ9P0R6 139 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 KCNN3Q9UGI6 736 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 ANKUB1A6NFN9 424 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 EFCAB7A8K855 629 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 FOXN1O15353 648 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 MED24O75448 989 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 MTHFRP42898 656 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 SLC12A3P55017 1021 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 SLC3A1Q07837 685 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 HSPA14Q0VDF9 509 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 FAM47AQ5JRC9 791 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 FAM91A1Q658Y4 838 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 LINGO2Q7L985 606 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 MPP5Q8N3R9 675 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 COPS5Q92905 334 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 HDAC10Q969S8 669 aa7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 SLC7A6OSQ96CW6 309 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-201ENST00000313860 MYOCQ99972 504 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms