RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 SERINC3Q13530 473 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 FZD2Q14332 565 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 PARP15Q460N3 678 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 ZNF542PQ5EBM4 170 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 PLEKHA7Q6IQ23 1121 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 PPP1R2P3Q6NXS1 205 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 GDPD4Q6W3E5 623 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 KYAT3Q6YP21 454 aaKnown RBP9.86□□□□□ -0.83
VPS41-201ENST00000265745 TMC6Q7Z403 805 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 TTC7BQ86TV6 843 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 ZNF354CQ86Y25 554 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 CACTIN-AS1Q8N1I8 211 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 ARFGAP1Q8N6T3 406 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 NETO2Q8NC67 525 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 ANKK1Q8NFD2 765 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 RFFLQ8WZ73 363 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 CENPTQ96BT3 561 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 ARHGEF26Q96DR7 871 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 GDAP1L1Q96MZ0 367 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 KLHL32Q96NJ5 620 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 OSBPL1AQ9BXW6 950 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 TTYH3Q9C0H2 523 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 CATSPERBQ9H7T0 1116 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 PARVAQ9NVD7 372 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 AIPL1Q9NZN9 384 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 DKK3Q9UBP4 350 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 GGT7Q9UJ14 662 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 ITM2BQ9Y287 266 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 PCDHB3Q9Y5E6 796 aa9.86□□□□□ -0.83
VPS41-201ENST00000265745 CELSR3Q9NYQ7 3312 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 ACACAQ13085 2346 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 GOLGA4Q13439 2230 aaKnown RBP9.85□□□□□ -0.83
VPS41-201ENST00000265745 A0A1W2PQC6 194 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 NEMP2A6NFY4 417 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 TMEM191CA6NGB0 347 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 LRRC53A6NM62 1247 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 SMTNL1A8MU46 457 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 TMCO5BA8MYB1 307 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 FPGTO14772 594 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 SCAMP1O15126 338 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 FGF10O15520 208 aaPredicted RBP9.85□□□□□ -0.83
VPS41-201ENST00000265745 CSF2P04141 144 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 CKMT1AP12532 417 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 GZMAP12544 262 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 TIMP2P16035 220 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 PSMA2P25787 234 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 HTR7P34969 479 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 HNF1BP35680 557 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 RABIFP47224 123 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 PFN3P60673 137 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 RHOAP61586 193 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 HNRNPKP61978 463 aaKnown RBP eCLIP9.85□□□□□ -0.83
VPS41-201ENST00000265745 LSM11P83369 360 aaKnown RBP eCLIP9.85□□□□□ -0.83
VPS41-201ENST00000265745 E2F1Q01094 437 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 RAD51Q06609 339 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 CYTH1Q15438 398 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 TPRG1LQ5T0D9 272 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 HES3Q5TGS1 186 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 C19orf48Q6RUI8 117 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 ZNF571Q7Z3V5 609 aaPredicted RBP9.85□□□□□ -0.83
VPS41-201ENST00000265745 PTAR1Q7Z6K3 402 aaPredicted RBP9.85□□□□□ -0.83
VPS41-201ENST00000265745 NAP1L5Q96NT1 182 aaPredicted RBP9.85□□□□□ -0.83
VPS41-201ENST00000265745 CPEB1Q9BZB8 566 aaKnown RBP9.85□□□□□ -0.83
VPS41-201ENST00000265745 HAUS4Q9H6D7 363 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 LRRC19Q9H756 370 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 GPATCH2LQ9NWQ4 482 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 DNAJC28Q9NX36 388 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 DONSONQ9NYP3 566 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 KLF15Q9UIH9 416 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 LAMA5O15230 3695 aa9.85□□□□□ -0.83
VPS41-201ENST00000265745 DSPP15924 2871 aaKnown RBP9.85□□□□□ -0.83
VPS41-201ENST00000265745 URB1O60287 2271 aaKnown RBP9.84□□□□□ -0.83
VPS41-201ENST00000265745 LY6G6EA0A0G2JKS1 128 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 A0A1B0GTH6 734 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 EIF3CLB5ME19 914 aaKnown RBP9.84□□□□□ -0.83
VPS41-201ENST00000265745 J3KR12 359 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 K7ESM1 405 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 DDX3XO00571 662 aaKnown RBP eCLIP9.84□□□□□ -0.83
VPS41-201ENST00000265745 INSIG1O15503 277 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 FFAR2O15552 330 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 MMP20O60882 483 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 IGSF6O95976 241 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 FTLP02792 175 aaPredicted RBP9.84□□□□□ -0.83
VPS41-201ENST00000265745 NME1P15531 152 aaKnown RBP9.84□□□□□ -0.83
VPS41-201ENST00000265745 DESP17661 470 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 ITIH2P19823 946 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 ZNF165P49910 485 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 NDST2P52849 883 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 TPI1P60174 286 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 INSM1Q01101 510 aaPredicted RBP9.84□□□□□ -0.83
VPS41-201ENST00000265745 EIF2B5Q13144 721 aaKnown RBP9.84□□□□□ -0.83
VPS41-201ENST00000265745 PDE1CQ14123 709 aaPredicted RBP9.84□□□□□ -0.83
VPS41-201ENST00000265745 ELOAQ14241 798 aaKnown RBP9.84□□□□□ -0.83
VPS41-201ENST00000265745 NR1I3Q14994 352 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 CA9Q16790 459 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 FILIP1LQ4L180 1135 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 HS1BP3Q53T59 392 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 LRRC73Q5JTD7 316 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 ERMARDQ5T6L9 678 aa9.84□□□□□ -0.83
VPS41-201ENST00000265745 E4F1Q66K89 784 aaPredicted RBP9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms