RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 FSHRP23945 695 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 DMTNQ08495 405 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 SLC10A2Q12908 348 aaPredicted RBP11.7□□□□□ -0.54
VPS4A-201ENST00000254950 CCDC153Q494R4 210 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 PIK3R6Q5UE93 754 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 KYAT3Q6YP21 454 aaKnown RBP11.7□□□□□ -0.54
VPS4A-201ENST00000254950 ARID3BQ8IVW6 561 aaPredicted RBP11.7□□□□□ -0.54
VPS4A-201ENST00000254950 MFSD3Q96ES6 412 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 PHTF1Q9UMS5 762 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 CRYL1Q9Y2S2 319 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 TCAF1Q9Y4C2 921 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 PCDHGC4Q9Y5F7 938 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 PARP14Q460N5 1801 aa11.7□□□□□ -0.54
VPS4A-201ENST00000254950 C2orf78A6NCI8 922 aa11.69□□□□□ -0.54
VPS4A-201ENST00000254950 TPP1O14773 563 aa11.69□□□□□ -0.54
VPS4A-201ENST00000254950 PHGDHO43175 533 aaKnown RBP11.69□□□□□ -0.54
VPS4A-201ENST00000254950 ATP5HO75947 161 aa11.69□□□□□ -0.54
VPS4A-201ENST00000254950 ALADP13716 330 aa11.69□□□□□ -0.54
VPS4A-201ENST00000254950 CTPS1P17812 591 aa11.69□□□□□ -0.54
VPS4A-201ENST00000254950 CAP1Q01518 475 aa11.69□□□□□ -0.54
VPS4A-201ENST00000254950 EFTUD2Q15029 972 aaKnown RBP eCLIP11.69□□□□□ -0.54
VPS4A-201ENST00000254950 FBXO6Q9NRD1 293 aaPredicted RBP11.69□□□□□ -0.54
VPS4A-201ENST00000254950 ABCB8Q9NUT2 735 aa11.69□□□□□ -0.54
VPS4A-201ENST00000254950 SOX13Q9UN79 622 aa11.69□□□□□ -0.54
VPS4A-201ENST00000254950 LEFTY2O00292 366 aa11.69□□□□□ -0.54
VPS4A-201ENST00000254950 H2AFYO75367 372 aaKnown RBP11.69□□□□□ -0.54
VPS4A-201ENST00000254950 SP100P23497 879 aaPredicted RBP11.69□□□□□ -0.54
VPS4A-201ENST00000254950 HNRNPH2P55795 449 aaKnown RBP11.69□□□□□ -0.54
VPS4A-201ENST00000254950 MYO1HQ8N1T3 1032 aa11.69□□□□□ -0.54
VPS4A-201ENST00000254950 CRISPLD2Q9H0B8 497 aa11.69□□□□□ -0.54
VPS4A-201ENST00000254950 DZANK1Q9NVP4 752 aa11.69□□□□□ -0.54
VPS4A-201ENST00000254950 RNF112Q9ULX5 631 aa11.69□□□□□ -0.54
VPS4A-201ENST00000254950 RRP15Q9Y3B9 282 aaKnown RBP11.69□□□□□ -0.54
VPS4A-201ENST00000254950 A0A1W2PQ67 120 aa11.69□□□□□ -0.54
VPS4A-201ENST00000254950 TRIM43BA6NCK2 446 aa11.69□□□□□ -0.54
VPS4A-201ENST00000254950 C1QTNF3-AMACRE9PGA6 284 aa11.69□□□□□ -0.54
VPS4A-201ENST00000254950 AGPSO00116 658 aa11.69□□□□□ -0.54
VPS4A-201ENST00000254950 TMCC1O94876 653 aa11.69□□□□□ -0.54
VPS4A-201ENST00000254950 SEC24AO95486 1093 aa11.69□□□□□ -0.54
VPS4A-201ENST00000254950 TTPAP49638 278 aa11.69□□□□□ -0.54
VPS4A-201ENST00000254950 ZBTB17Q13105 803 aa11.69□□□□□ -0.54
VPS4A-201ENST00000254950 CTBP1Q13363 440 aa11.69□□□□□ -0.54
VPS4A-201ENST00000254950 CELF5Q8N6W0 485 aaKnown RBP11.69□□□□□ -0.54
VPS4A-201ENST00000254950 KHSRPQ92945 711 aaKnown RBP eCLIP11.69□□□□□ -0.54
VPS4A-201ENST00000254950 TRIM43Q96BQ3 446 aaPredicted RBP11.69□□□□□ -0.54
VPS4A-201ENST00000254950 GAS2L1Q99501 681 aaPredicted RBP11.69□□□□□ -0.54
VPS4A-201ENST00000254950 ILKAPQ9H0C8 392 aaPredicted RBP11.69□□□□□ -0.54
VPS4A-201ENST00000254950 RHOJQ9H4E5 214 aa11.69□□□□□ -0.54
VPS4A-201ENST00000254950 ASB8Q9H765 288 aa11.69□□□□□ -0.54
VPS4A-201ENST00000254950 FCF1Q9Y324 198 aaKnown RBP11.69□□□□□ -0.54
VPS4A-201ENST00000254950 NME7Q9Y5B8 376 aa11.69□□□□□ -0.54
VPS4A-201ENST00000254950 PCDH8O95206 1070 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 PABPC1P11940 636 aaKnown RBP11.68□□□□□ -0.54
VPS4A-201ENST00000254950 BGNP21810 368 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 GRIA1P42261 906 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 DGKGP49619 791 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 SERINC3Q13530 473 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 CBX2Q14781 532 aaPredicted RBP11.68□□□□□ -0.54
VPS4A-201ENST00000254950 RBBP7Q16576 425 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 KLHDC10Q6PID8 442 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 SRLQ86TD4 932 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 TDRPQ86YL5 185 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 CMTM8Q8IZV2 173 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 IGSF8Q969P0 613 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 FEM1CQ96JP0 617 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 RABGEF1Q9UJ41 708 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 SYCE1LA8MT33 242 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 HHLA1C9JL84 531 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 RFPL2O75678 378 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 LATS1O95835 1130 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 UGT2B4P06133 528 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 ACOX1Q15067 660 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 KIF19Q2TAC6 998 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 FAM182AQ5T1J6 154 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 C1orf53Q5VUE5 145 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 MRPL43Q8N983 215 aaKnown RBP11.68□□□□□ -0.54
VPS4A-201ENST00000254950 RAD18Q9NS91 495 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 BAIAP2L1Q9UHR4 511 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 MTO1Q9Y2Z2 717 aaKnown RBP11.68□□□□□ -0.54
VPS4A-201ENST00000254950 RLFQ13129 1914 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 SNAP91O60641 907 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 PRAMEF11O60813 436 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 SUPT7LO94864 414 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 CHRNA4P43681 627 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 IMPG1Q17R60 797 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 THEMIS2Q5TEJ8 643 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 DDIASQ8IXT1 998 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 CHPFQ8IZ52 775 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 OR4L1Q8NH43 312 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 STYXQ8WUJ0 223 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 OR8D1Q8WZ84 308 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 CENPTQ96BT3 561 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 RPL10LQ96L21 214 aaKnown RBP11.68□□□□□ -0.54
VPS4A-201ENST00000254950 TNKS2Q9H2K2 1166 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 NMRAL1Q9HBL8 299 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 BPIFA1Q9NP55 256 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 LGALS13Q9UHV8 139 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 TRIP12Q14669 1992 aaPredicted RBP11.68□□□□□ -0.54
VPS4A-201ENST00000254950 MYO7AQ13402 2215 aa11.68□□□□□ -0.54
VPS4A-201ENST00000254950 PCNTO95613 3336 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms