RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 SAC3D1A6NKF1 404 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 SLCO1B7G3V0H7 640 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 PSMD12O00232 456 aaPredicted RBP12.52□□□□□ -0.41
NUP88-201ENST00000225696 UBFD1O14562 309 aaKnown RBP12.52□□□□□ -0.41
NUP88-201ENST00000225696 TFPTP0C1Z6 253 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 CCDC166P0CW27 439 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 ATP6V1B2P21281 511 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 CHRNA4P43681 627 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 PSMD8P48556 350 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 TKTL1P51854 596 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 NME5P56597 212 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 CDH17Q12864 832 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 CSHL1Q14406 222 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 TTLL4Q14679 1199 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 CLEC6AQ6EIG7 209 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 KRT80Q6KB66 452 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 ALDH16A1Q8IZ83 802 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 EDEM1Q92611 657 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 PPWD1Q96BP3 646 aaKnown RBP12.52□□□□□ -0.41
NUP88-201ENST00000225696 PHF21BQ96EK2 531 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 RMND5BQ96G75 393 aaPredicted RBP12.52□□□□□ -0.41
NUP88-201ENST00000225696 ELMO2Q96JJ3 720 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 TSNARE1Q96NA8 513 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 SLC2A13Q96QE2 648 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 DCUN1D5Q9BTE7 237 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 ULBP1Q9BZM6 244 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 DNAI2Q9GZS0 605 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 MUC3BQ9H195 1237 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 UTP6Q9NYH9 597 aaKnown RBP12.52□□□□□ -0.41
NUP88-201ENST00000225696 GIMAP2Q9UG22 337 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 CIDEBQ9UHD4 219 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 MID2Q9UJV3 735 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 CDC14AQ9UNH5 594 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 GMEB1Q9Y692 573 aa12.52□□□□□ -0.41
NUP88-201ENST00000225696 BRCA2P51587 3418 aa12.51□□□□□ -0.41
NUP88-201ENST00000225696 SMIM28A0A1B0GU29 152 aa12.51□□□□□ -0.41
NUP88-201ENST00000225696 HEATR9A2RTY3 570 aa12.51□□□□□ -0.41
NUP88-201ENST00000225696 STMN1P16949 149 aa12.51□□□□□ -0.41
NUP88-201ENST00000225696 SLC7A2P52569 658 aa12.51□□□□□ -0.41
NUP88-201ENST00000225696 HK2P52789 917 aa12.51□□□□□ -0.41
NUP88-201ENST00000225696 GALNT2Q10471 571 aa12.51□□□□□ -0.41
NUP88-201ENST00000225696 NOMO2Q5JPE7 1267 aa12.51□□□□□ -0.41
NUP88-201ENST00000225696 DENND5AQ6IQ26 1287 aa12.51□□□□□ -0.41
NUP88-201ENST00000225696 ZBTB49Q6ZSB9 765 aa12.51□□□□□ -0.41
NUP88-201ENST00000225696 RETREG3Q86VR2 466 aa12.51□□□□□ -0.41
NUP88-201ENST00000225696 APPL2Q8NEU8 664 aa12.51□□□□□ -0.41
NUP88-201ENST00000225696 OTUD5Q96G74 571 aa12.51□□□□□ -0.41
NUP88-201ENST00000225696 C3orf30Q96M34 536 aa12.51□□□□□ -0.41
NUP88-201ENST00000225696 MRPL46Q9H2W6 279 aaKnown RBP12.51□□□□□ -0.41
NUP88-201ENST00000225696 PLEKHA5Q9HAU0 1116 aa12.51□□□□□ -0.41
NUP88-201ENST00000225696 IL1RL2Q9HB29 575 aa12.51□□□□□ -0.41
NUP88-201ENST00000225696 IGSF5Q9NSI5 407 aa12.51□□□□□ -0.41
NUP88-201ENST00000225696 NCKIPSDQ9NZQ3 722 aa12.51□□□□□ -0.41
NUP88-201ENST00000225696 PTGDR2Q9Y5Y4 395 aa12.51□□□□□ -0.41
NUP88-201ENST00000225696 MYLKQ15746 1914 aa12.51□□□□□ -0.41
NUP88-201ENST00000225696 TANC1Q9C0D5 1861 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.5□□□□□ -0.41
NUP88-201ENST00000225696 UBDO15205 165 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 USP17L7P0C7H9 530 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 NCAM1P13591 858 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 YBX3P16989 372 aaKnown RBP eCLIP12.5□□□□□ -0.41
NUP88-201ENST00000225696 NPR3P17342 541 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 SLC7A1P30825 629 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 GRIA3P42263 894 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 KCNC1P48547 511 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 KCTD2Q14681 263 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 PKN3Q6P5Z2 889 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 EPHX4Q8IUS5 362 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 APOBEC3FQ8IUX4 373 aaKnown RBP12.5□□□□□ -0.41
NUP88-201ENST00000225696 FUNDC1Q8IVP5 155 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 IPMKQ8NFU5 416 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 TFAP2CQ92754 450 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 HDAC11Q96DB2 347 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 FAM210AQ96ND0 272 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 OSMRQ99650 979 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 OLFM1Q99784 485 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 HAUS8Q9BT25 410 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 ANKRD60Q9BZ19 345 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 LRRC4Q9HBW1 653 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 SPAG4Q9NPE6 437 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 PNPLA3Q9NST1 481 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 SMOXQ9NWM0 555 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 DDIT4Q9NX09 232 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 RRN3Q9NYV6 651 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 TMEM181Q9P2C4 612 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 IPO11Q9UI26 975 aaKnown RBP12.5□□□□□ -0.41
NUP88-201ENST00000225696 FBXW11Q9UKB1 542 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 SARDHQ9UL12 918 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 LTBP3Q9NS15 1303 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 TRPC5OSA6NMA1 111 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 H3BRB1 525 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 MRASO14807 208 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 AKAP10O43572 662 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 NPHS1O60500 1241 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 TPST1O60507 370 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 SEC24DO94855 1032 aaPredicted RBP12.5□□□□□ -0.41
NUP88-201ENST00000225696 LRIG2O94898 1065 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 PLOD1Q02809 727 aaPredicted RBP12.5□□□□□ -0.41
NUP88-201ENST00000225696 BTBD8Q5XKL5 378 aa12.5□□□□□ -0.41
NUP88-201ENST00000225696 ZNF470Q6ECI4 717 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms