RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 MAPK11Q15759 364 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 NOMO2Q5JPE7 1267 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 GPRIN3Q6ZVF9 776 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 AMER2Q8N7J2 671 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 OR5B17Q8NGF7 314 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 SLC12A4Q9UP95 1085 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 ITSN1Q15811 1721 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 SNAP91O60641 907 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 GRM5P41594 1212 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 GABRB2P47870 512 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 MARCKSL1P49006 195 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 RPL7AP62424 266 aaKnown RBP13.67□□□□□ -0.22
SF3A1-201ENST00000215793 MRPS5P82675 430 aaKnown RBP13.67□□□□□ -0.22
SF3A1-201ENST00000215793 DDR1Q08345 913 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 BRMS1LQ5PSV4 323 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 PPP1R15BQ5SWA1 713 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 FAM180AQ6UWF9 173 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 IRF2BP2Q7Z5L9 587 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 TTC7BQ86TV6 843 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 HJURPQ8NCD3 748 aaPredicted RBP13.67□□□□□ -0.22
SF3A1-201ENST00000215793 COPS5Q92905 334 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 AHCYL2Q96HN2 611 aaKnown RBP13.67□□□□□ -0.22
SF3A1-201ENST00000215793 Q96MT0 163 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 INPP4AQ96PE3 977 aaPredicted RBP13.67□□□□□ -0.22
SF3A1-201ENST00000215793 TRMOQ9BU70 441 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 DGCR6LQ9BY27 220 aa13.67□□□□□ -0.22
SF3A1-201ENST00000215793 SNPHO15079 494 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 FGF1P05230 155 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 HGFP14210 728 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 IL12RB1P42701 662 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 DCTN2Q13561 401 aaKnown RBP13.66□□□□□ -0.22
SF3A1-201ENST00000215793 COMMD2Q86X83 199 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 CROCCP3Q8IVE0 287 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 SFRP1Q8N474 314 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 MTFMTQ96DP5 389 aaKnown RBP13.66□□□□□ -0.22
SF3A1-201ENST00000215793 ANGPT4Q9Y264 503 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 C1QTNF3-AMACRE9PGA6 284 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 BUD23O43709 281 aaKnown RBP13.66□□□□□ -0.22
SF3A1-201ENST00000215793 OR6B1O95007 311 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 WARSP23381 471 aaKnown RBP13.66□□□□□ -0.22
SF3A1-201ENST00000215793 CCR4P51679 360 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 CRYBB1P53674 252 aaPredicted RBP13.66□□□□□ -0.22
SF3A1-201ENST00000215793 CDK18Q07002 472 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 DEPDC4Q8N2C3 294 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 KCTD4Q8WVF5 259 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 PIK3R5Q8WYR1 880 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 MYLPFQ96A32 169 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 FHDC1Q9C0D6 1143 aaPredicted RBP13.66□□□□□ -0.22
SF3A1-201ENST00000215793 ASAH2Q9NR71 780 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 GIT1Q9Y2X7 761 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 HOXB6P17509 224 aaKnown RBP13.66□□□□□ -0.22
SF3A1-201ENST00000215793 ITGB5P18084 799 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 ABL2P42684 1182 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 DGCR6Q14129 220 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 BROXQ5VW32 411 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 IKBIPQ70UQ0 350 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 OFCC1Q8IZS5 231 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 CLYBLQ8N0X4 340 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 TOP6BLQ8N6T0 577 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 OR52L1Q8NGH7 329 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 ZNF671Q8TAW3 534 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 HELQQ8TDG4 1101 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 MFSD14AQ96MC6 490 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 RNF208Q9H0X6 261 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 CTSEP14091 401 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 USP46P62068 366 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 PFKPQ01813 784 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 TCEA2Q15560 299 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 B3GNT6Q6ZMB0 384 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 GPR180Q86V85 440 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 GRIN3AQ8TCU5 1115 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 BSNDQ8WZ55 320 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 RPRD1BQ9NQG5 326 aaKnown RBP13.66□□□□□ -0.22
SF3A1-201ENST00000215793 EFR3BQ9Y2G0 817 aa13.66□□□□□ -0.22
SF3A1-201ENST00000215793 MRPL42Q9Y6G3 142 aaKnown RBP13.66□□□□□ -0.22
SF3A1-201ENST00000215793 ROBO3Q96MS0 1386 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 ADSSP30520 456 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 TNFSF9P41273 254 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 STAT5AP42229 794 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 GSTM5P46439 218 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 SPIRE1Q08AE8 756 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 ABRAXAS1Q6UWZ7 409 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 DHDDSQ86SQ9 333 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 OMDQ99983 421 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 GRIP2Q9C0E4 1043 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 POLE3Q9NRF9 147 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 XPR1Q9UBH6 696 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 PRPF19Q9UMS4 504 aaKnown RBP13.65□□□□□ -0.22
SF3A1-201ENST00000215793 KCNE2Q9Y6J6 123 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 RCCD1A6NED2 376 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 AZIN1O14977 448 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 CALCAP01258 141 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 SPATA31C1P0DKV0 1188 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 PRKAG1P54619 331 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 DCLRE1AQ6PJP8 1040 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 APTXQ7Z2E3 356 aaKnown RBP13.65□□□□□ -0.22
SF3A1-201ENST00000215793 CDYL2Q8N8U2 506 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 UXS1Q8NBZ7 420 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 OR7A2PQ8NGA2 310 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 DNAJB14Q8TBM8 379 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms