RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ASNA1O43681 348 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 PRKNO60260 465 aaPredicted RBP0.52□□□□□ -2.33
VPS35-212ENST00000640313 MARCH6O60337 910 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 CCNT2O60583 730 aaKnown RBP0.52□□□□□ -2.33
VPS35-212ENST00000640313 HEXIM1O94992 359 aaKnown RBP0.52□□□□□ -2.33
VPS35-212ENST00000640313 TNFRSF6BO95407 300 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 GLP2RO95838 553 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 ANXA6P08133 673 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 MYL3P08590 195 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 CYP3A4P08684 503 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 GOLGA6DP0CG33 693 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 PEPDP12955 493 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 ZNF26P17031 533 aaPredicted RBP0.52□□□□□ -2.33
VPS35-212ENST00000640313 ABCB4P21439 1286 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 SHC1P29353 583 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 PDIA3P30101 505 aaKnown RBP0.52□□□□□ -2.33
VPS35-212ENST00000640313 CDK7P50613 346 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 NEK3P51956 506 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 ADPRHP54922 357 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 TBX4P57082 545 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 TAS2R50P59544 299 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 RPL15P61313 204 aaKnown RBP0.52□□□□□ -2.33
VPS35-212ENST00000640313 SHC2P98077 582 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 RHAGQ02094 409 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 TLE3Q04726 772 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 SLC20A2Q08357 652 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 IFIT5Q13325 482 aaKnown RBP0.52□□□□□ -2.33
VPS35-212ENST00000640313 EIF4EBP2Q13542 120 aaPredicted RBP0.52□□□□□ -2.33
VPS35-212ENST00000640313 PEX6Q13608 980 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 CAPRIN1Q14444 709 aaKnown RBP0.52□□□□□ -2.33
VPS35-212ENST00000640313 HLTFQ14527 1009 aaKnown RBP eCLIP0.52□□□□□ -2.33
VPS35-212ENST00000640313 GRM4Q14833 912 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 TUBB8Q3ZCM7 444 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 PLK5Q496M5 336 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 COBLL1Q53SF7 1204 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 FAM209BQ5JX69 171 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 TTC22Q5TAA0 569 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 FAM69BQ5VUD6 431 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 ARL6IP4Q66PJ3 421 aaKnown RBP0.52□□□□□ -2.33
VPS35-212ENST00000640313 TANGO2Q6ICL3 276 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 SLC35E4Q6ICL7 350 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 TYW3Q6IPR3 259 aaKnown RBP0.52□□□□□ -2.33
VPS35-212ENST00000640313 Q6ZR54 194 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 TOGARAM2Q6ZUX3 1019 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 RNF44Q7L0R7 432 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 BEND5Q7L4P6 421 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 PATL1Q86TB9 770 aaKnown RBP0.52□□□□□ -2.33
VPS35-212ENST00000640313 DPP9Q86TI2 863 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 TRIM74Q86UV6 250 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 TRIM73Q86UV7 250 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 ADIPOR2Q86V24 386 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 FGFRL1Q8N441 504 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 CCDC33Q8N5R6 958 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 HORMAD2Q8N7B1 307 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 BMPERQ8N8U9 685 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 KLHDC9Q8NEP7 349 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 TRIM58Q8NG06 486 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 OR10V1Q8NGI7 309 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 SVIPQ8NHG7 77 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 WDR20Q8TBZ3 569 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 CLEC4CQ8WTT0 213 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 STYXQ8WUJ0 223 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 IPCEF1Q8WWN9 437 aaPredicted RBP0.52□□□□□ -2.33
VPS35-212ENST00000640313 IP6K1Q92551 441 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 FIG4Q92562 907 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 ZNF653Q96CK0 615 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 KLHL29Q96CT2 875 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 MTBPQ96DY7 904 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 MOCOSQ96EN8 888 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 LRRC46Q96FV0 321 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 LRR1Q96L50 414 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 ADAD1Q96M93 576 aaKnown RBP0.52□□□□□ -2.33
VPS35-212ENST00000640313 TTC14Q96N46 770 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 OR1F2PQ96R84 312 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 VGLL1Q99990 258 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 CABLES2Q9BTV7 478 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 EIF2AQ9BY44 585 aaKnown RBP0.52□□□□□ -2.33
VPS35-212ENST00000640313 MAGEB5Q9BZ81 275 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 DDX24Q9GZR7 859 aaKnown RBP eCLIP0.52□□□□□ -2.33
VPS35-212ENST00000640313 TP63Q9H3D4 680 aaPredicted RBP0.52□□□□□ -2.33
VPS35-212ENST00000640313 ACTR5Q9H9F9 607 aaPredicted RBP0.52□□□□□ -2.33
VPS35-212ENST00000640313 Q9N2J8 555 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 NECTIN3Q9NQS3 549 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 TM7SF3Q9NS93 570 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 TBC1D23Q9NUY8 699 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 GOLGA6AQ9NYA3 693 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 CNTN6Q9UQ52 1028 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 FAM50BQ9Y247 325 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 RCE1Q9Y256 329 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 UBE2J1Q9Y385 318 aaPredicted RBP0.52□□□□□ -2.33
VPS35-212ENST00000640313 RAP2CQ9Y3L5 183 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 PKP3Q9Y446 797 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 PCDHB7Q9Y5E2 793 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 PCDHGB2Q9Y5G2 931 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 SNX13Q9Y5W8 968 aa0.52□□□□□ -2.33
VPS35-212ENST00000640313 SOS1Q07889 1333 aaPredicted RBP0.52□□□□□ -2.33
VPS35-212ENST00000640313 A0A087WV62 115 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 ABHD14A-ACY1A0A1B0GW23 586 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 C17orf102A2RUQ5 167 aa0.51□□□□□ -2.33
VPS35-212ENST00000640313 ASPDHA6ND91 283 aa0.51□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms