RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 FAM72CH0Y354 149 aa18.7■□□□□ 0.58
CLN3-241ENST00000635861 TLX3O43711 291 aaPredicted RBP18.7■□□□□ 0.58
CLN3-241ENST00000635861 LZTS3O60299 673 aaPredicted RBP18.7■□□□□ 0.58
CLN3-241ENST00000635861 DESP17661 470 aa18.7■□□□□ 0.58
CLN3-241ENST00000635861 RFC1P35251 1148 aaPredicted RBP18.7■□□□□ 0.58
CLN3-241ENST00000635861 KLK7P49862 253 aa18.7■□□□□ 0.58
CLN3-241ENST00000635861 SUOXP51687 545 aa18.7■□□□□ 0.58
CLN3-241ENST00000635861 YBEYP58557 167 aaPredicted RBP18.7■□□□□ 0.58
CLN3-241ENST00000635861 PTK2BQ14289 1009 aa18.7■□□□□ 0.58
CLN3-241ENST00000635861 CLEC16AQ2KHT3 1053 aa18.7■□□□□ 0.58
CLN3-241ENST00000635861 MYLK3Q32MK0 819 aa18.7■□□□□ 0.58
CLN3-241ENST00000635861 FAM72AQ5TYM5 149 aa18.7■□□□□ 0.58
CLN3-241ENST00000635861 FAM72DQ6L9T8 149 aa18.7■□□□□ 0.58
CLN3-241ENST00000635861 ZCCHC8Q6NZY4 707 aaKnown RBP18.7■□□□□ 0.58
CLN3-241ENST00000635861 FAM72BQ86X60 149 aa18.7■□□□□ 0.58
CLN3-241ENST00000635861 LSMEM2Q8N112 164 aa18.7■□□□□ 0.58
CLN3-241ENST00000635861 CCDC185Q8N715 623 aa18.7■□□□□ 0.58
CLN3-241ENST00000635861 RTL3Q8N8U3 475 aaKnown RBP18.7■□□□□ 0.58
CLN3-241ENST00000635861 ZNF548Q8NEK5 533 aaPredicted RBP18.7■□□□□ 0.58
CLN3-241ENST00000635861 NEK11Q8NG66 645 aa18.7■□□□□ 0.58
CLN3-241ENST00000635861 TBATAQ96M53 351 aa18.7■□□□□ 0.58
CLN3-241ENST00000635861 GDAP1L1Q96MZ0 367 aa18.7■□□□□ 0.58
CLN3-241ENST00000635861 DEPDC7Q96QD5 511 aa18.7■□□□□ 0.58
CLN3-241ENST00000635861 DONSONQ9NYP3 566 aa18.7■□□□□ 0.58
CLN3-241ENST00000635861 IPO11Q9UI26 975 aaKnown RBP18.7■□□□□ 0.58
CLN3-241ENST00000635861 MFHAS1Q9Y4C4 1052 aa18.7■□□□□ 0.58
CLN3-241ENST00000635861 FAM170AA1A519 330 aa18.69■□□□□ 0.58
CLN3-241ENST00000635861 ANKRD62A6NC57 917 aa18.69■□□□□ 0.58
CLN3-241ENST00000635861 K7ESM1 405 aa18.69■□□□□ 0.58
CLN3-241ENST00000635861 KRIT1O00522 736 aa18.69■□□□□ 0.58
CLN3-241ENST00000635861 NEMP1O14524 444 aa18.69■□□□□ 0.58
CLN3-241ENST00000635861 TPP1O14773 563 aa18.69■□□□□ 0.58
CLN3-241ENST00000635861 AREL1O15033 823 aa18.69■□□□□ 0.58
CLN3-241ENST00000635861 OPA1O60313 960 aa18.69■□□□□ 0.58
CLN3-241ENST00000635861 IGSF6O95976 241 aa18.69■□□□□ 0.58
CLN3-241ENST00000635861 HTR7P34969 479 aa18.69■□□□□ 0.58
CLN3-241ENST00000635861 ABL2P42684 1182 aa18.69■□□□□ 0.58
CLN3-241ENST00000635861 PFN3P60673 137 aa18.69■□□□□ 0.58
CLN3-241ENST00000635861 YPEL5P62699 121 aa18.69■□□□□ 0.58
CLN3-241ENST00000635861 C1QBPQ07021 282 aaKnown RBP18.69■□□□□ 0.58
CLN3-241ENST00000635861 RAB6CQ53S08 254 aa18.69■□□□□ 0.58
CLN3-241ENST00000635861 EFHC2Q5JST6 749 aa18.69■□□□□ 0.58
CLN3-241ENST00000635861 PPP1R2P3Q6NXS1 205 aa18.69■□□□□ 0.58
CLN3-241ENST00000635861 WDR59Q6PJI9 974 aa18.69■□□□□ 0.58
CLN3-241ENST00000635861 GRAMD1AQ96CP6 724 aa18.69■□□□□ 0.58
CLN3-241ENST00000635861 UBL7Q96S82 380 aaPredicted RBP18.69■□□□□ 0.58
CLN3-241ENST00000635861 C1QTNF7Q9BXJ2 289 aa18.69■□□□□ 0.58
CLN3-241ENST00000635861 TTYH3Q9C0H2 523 aa18.69■□□□□ 0.58
CLN3-241ENST00000635861 RAB6CQ9H0N0 254 aa18.69■□□□□ 0.58
CLN3-241ENST00000635861 CATSPERBQ9H7T0 1116 aa18.69■□□□□ 0.58
CLN3-241ENST00000635861 DKK3Q9UBP4 350 aa18.69■□□□□ 0.58
CLN3-241ENST00000635861 LIMA1Q9UHB6 759 aaKnown RBP18.69■□□□□ 0.58
CLN3-241ENST00000635861 SALL4Q9UJQ4 1053 aa18.69■□□□□ 0.58
CLN3-241ENST00000635861 LRP4O75096 1905 aa18.69■□□□□ 0.58
CLN3-241ENST00000635861 IGLON5A6NGN9 336 aa18.68■□□□□ 0.58
CLN3-241ENST00000635861 LGALS16A8MUM7 142 aa18.68■□□□□ 0.58
CLN3-241ENST00000635861 WASH4PA8MWX3 477 aa18.68■□□□□ 0.58
CLN3-241ENST00000635861 EPHB6O15197 1021 aa18.68■□□□□ 0.58
CLN3-241ENST00000635861 RAD51BO15315 384 aa18.68■□□□□ 0.58
CLN3-241ENST00000635861 BRINP1O60477 761 aa18.68■□□□□ 0.58
CLN3-241ENST00000635861 UGT2B4P06133 528 aa18.68■□□□□ 0.58
CLN3-241ENST00000635861 CCDC172P0C7W6 258 aa18.68■□□□□ 0.58
CLN3-241ENST00000635861 ZNF143P52747 638 aaPredicted RBP18.68■□□□□ 0.58
CLN3-241ENST00000635861 COPB1P53618 953 aaKnown RBP18.68■□□□□ 0.58
CLN3-241ENST00000635861 PDE1CQ14123 709 aaPredicted RBP18.68■□□□□ 0.58
CLN3-241ENST00000635861 GRM3Q14832 879 aa18.68■□□□□ 0.58
CLN3-241ENST00000635861 TBC1D25Q3MII6 688 aa18.68■□□□□ 0.58
CLN3-241ENST00000635861 PARP15Q460N3 678 aa18.68■□□□□ 0.58
CLN3-241ENST00000635861 GDPD4Q6W3E5 623 aa18.68■□□□□ 0.58
CLN3-241ENST00000635861 TMC6Q7Z403 805 aa18.68■□□□□ 0.58
CLN3-241ENST00000635861 HCAR2Q8TDS4 363 aa18.68■□□□□ 0.58
CLN3-241ENST00000635861 KLHL32Q96NJ5 620 aa18.68■□□□□ 0.58
CLN3-241ENST00000635861 ERGIC2Q96RQ1 377 aa18.68■□□□□ 0.58
CLN3-241ENST00000635861 PCDHB18PQ96TA0 734 aa18.68■□□□□ 0.58
CLN3-241ENST00000635861 EPAS1Q99814 870 aa18.68■□□□□ 0.58
CLN3-241ENST00000635861 FANCLQ9NW38 375 aa18.68■□□□□ 0.58
CLN3-241ENST00000635861 ACTL7AQ9Y615 435 aa18.68■□□□□ 0.58
CLN3-241ENST00000635861 LRRC10BA6NIK2 292 aa18.67■□□□□ 0.58
CLN3-241ENST00000635861 FGF10O15520 208 aaPredicted RBP18.67■□□□□ 0.58
CLN3-241ENST00000635861 AQP9O43315 295 aa18.67■□□□□ 0.58
CLN3-241ENST00000635861 BUB1O43683 1085 aa18.67■□□□□ 0.58
CLN3-241ENST00000635861 TMCC1O94876 653 aa18.67■□□□□ 0.58
CLN3-241ENST00000635861 EPHB2P29323 1055 aa18.67■□□□□ 0.58
CLN3-241ENST00000635861 KDM7AQ6ZMT4 941 aa18.67■□□□□ 0.58
CLN3-241ENST00000635861 MON1BQ7L1V2 547 aa18.67■□□□□ 0.58
CLN3-241ENST00000635861 VOPP1Q96AW1 172 aa18.67■□□□□ 0.58
CLN3-241ENST00000635861 PCMTD1Q96MG8 357 aaPredicted RBP18.67■□□□□ 0.58
CLN3-241ENST00000635861 ZNF578Q96N58 590 aaPredicted RBP18.67■□□□□ 0.58
CLN3-241ENST00000635861 CPEB1Q9BZB8 566 aaKnown RBP18.67■□□□□ 0.58
CLN3-241ENST00000635861 ANO10Q9NW15 660 aa18.67■□□□□ 0.58
CLN3-241ENST00000635861 LY6G6EA0A0G2JKS1 128 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 TCRBV5S1A1TA0A578 114 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 EIF4E1BA6NMX2 242 aaKnown RBP18.66■□□□□ 0.58
CLN3-241ENST00000635861 TK2O00142 265 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 TM7SF2O76062 418 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 DXOO77932 396 aaKnown RBP18.66■□□□□ 0.58
CLN3-241ENST00000635861 JUNDP17535 347 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 THOP1P52888 689 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 MYL5Q02045 173 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 ZNF542PQ5EBM4 170 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms