RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 SYNE3Q6ZMZ3 975 aa2.99□□□□□ -1.93
SCN1A-208ENST00000625916 MB21D2Q8IYB1 491 aaPredicted RBP2.99□□□□□ -1.93
SCN1A-208ENST00000625916 OR13A1Q8NGR1 328 aa2.99□□□□□ -1.93
SCN1A-208ENST00000625916 RASSF8Q8NHQ8 419 aa2.99□□□□□ -1.93
SCN1A-208ENST00000625916 STYXQ8WUJ0 223 aa2.99□□□□□ -1.93
SCN1A-208ENST00000625916 CPT1BQ92523 772 aa2.99□□□□□ -1.93
SCN1A-208ENST00000625916 LRFN5Q96NI6 719 aa2.99□□□□□ -1.93
SCN1A-208ENST00000625916 RTKNQ9BST9 563 aa2.99□□□□□ -1.93
SCN1A-208ENST00000625916 ELAC1Q9H777 363 aaKnown RBP2.99□□□□□ -1.93
SCN1A-208ENST00000625916 ZFP57Q9NU63 452 aa2.99□□□□□ -1.93
SCN1A-208ENST00000625916 DDX43Q9NXZ2 648 aaKnown RBP2.99□□□□□ -1.93
SCN1A-208ENST00000625916 RCE1Q9Y256 329 aa2.99□□□□□ -1.93
SCN1A-208ENST00000625916 VDAC3Q9Y277 283 aa2.99□□□□□ -1.93
SCN1A-208ENST00000625916 FAM157AC9JC47 383 aa2.98□□□□□ -1.93
SCN1A-208ENST00000625916 J3KR12 359 aa2.98□□□□□ -1.93
SCN1A-208ENST00000625916 TNFRSF6BO95407 300 aa2.98□□□□□ -1.93
SCN1A-208ENST00000625916 CLDN14O95500 239 aa2.98□□□□□ -1.93
SCN1A-208ENST00000625916 IL1AP01583 271 aa2.98□□□□□ -1.93
SCN1A-208ENST00000625916 AVPR2P30518 371 aa2.98□□□□□ -1.93
SCN1A-208ENST00000625916 TNFAIP1Q13829 316 aa2.98□□□□□ -1.93
SCN1A-208ENST00000625916 LPIN1Q14693 890 aa2.98□□□□□ -1.93
SCN1A-208ENST00000625916 SYT16Q17RD7 645 aa2.98□□□□□ -1.93
SCN1A-208ENST00000625916 GALNTL6Q49A17 601 aa2.98□□□□□ -1.93
SCN1A-208ENST00000625916 C19orf48Q6RUI8 117 aa2.98□□□□□ -1.93
SCN1A-208ENST00000625916 RINLQ6ZS11 566 aa2.98□□□□□ -1.93
SCN1A-208ENST00000625916 RAB11FIP2Q7L804 512 aa2.98□□□□□ -1.93
SCN1A-208ENST00000625916 SYTL1Q8IYJ3 562 aa2.98□□□□□ -1.93
SCN1A-208ENST00000625916 CCDC105Q8IYK2 499 aa2.98□□□□□ -1.93
SCN1A-208ENST00000625916 CCDC138Q96M89 665 aa2.98□□□□□ -1.93
SCN1A-208ENST00000625916 CXorf56Q9H5V9 222 aa2.98□□□□□ -1.93
SCN1A-208ENST00000625916 ZNF696Q9H7X3 374 aa2.98□□□□□ -1.93
SCN1A-208ENST00000625916 LRRC4Q9HBW1 653 aa2.98□□□□□ -1.93
SCN1A-208ENST00000625916 WDR6Q9NNW5 1121 aaKnown RBP2.98□□□□□ -1.93
SCN1A-208ENST00000625916 ZNF224Q9NZL3 707 aa2.98□□□□□ -1.93
SCN1A-208ENST00000625916 FBXO40Q9UH90 709 aa2.98□□□□□ -1.93
SCN1A-208ENST00000625916 DAPP1Q9UN19 280 aa2.98□□□□□ -1.93
SCN1A-208ENST00000625916 MORC2Q9Y6X9 1032 aaPredicted RBP2.98□□□□□ -1.93
SCN1A-208ENST00000625916 COL2A1P02458 1487 aaPredicted RBP2.97□□□□□ -1.93
SCN1A-208ENST00000625916 A0A0G2JPF8 293 aa2.97□□□□□ -1.93
SCN1A-208ENST00000625916 OR6C68A6NDL8 312 aa2.97□□□□□ -1.93
SCN1A-208ENST00000625916 HNRNPCL3B7ZW38 293 aa2.97□□□□□ -1.93
SCN1A-208ENST00000625916 HNRNPCL1O60812 293 aaKnown RBP2.97□□□□□ -1.93
SCN1A-208ENST00000625916 TIPRLO75663 272 aa2.97□□□□□ -1.93
SCN1A-208ENST00000625916 HNRNPCL4P0DMR1 293 aa2.97□□□□□ -1.93
SCN1A-208ENST00000625916 SERPINA4P29622 427 aa2.97□□□□□ -1.93
SCN1A-208ENST00000625916 TM4SF4P48230 202 aa2.97□□□□□ -1.93
SCN1A-208ENST00000625916 ECT2LQ008S8 904 aa2.97□□□□□ -1.93
SCN1A-208ENST00000625916 PMP22Q01453 160 aa2.97□□□□□ -1.93
SCN1A-208ENST00000625916 LRRC24Q50LG9 513 aa2.97□□□□□ -1.93
SCN1A-208ENST00000625916 RUNDC3AQ59EK9 446 aa2.97□□□□□ -1.93
SCN1A-208ENST00000625916 CCDC129Q6ZRS4 1044 aa2.97□□□□□ -1.93
SCN1A-208ENST00000625916 KCNH5Q8NCM2 988 aa2.97□□□□□ -1.93
SCN1A-208ENST00000625916 OR4N2Q8NGD1 307 aa2.97□□□□□ -1.93
SCN1A-208ENST00000625916 GRAPLQ8TC17 118 aaPredicted RBP2.97□□□□□ -1.93
SCN1A-208ENST00000625916 PARD3BQ8TEW8 1205 aa2.97□□□□□ -1.93
SCN1A-208ENST00000625916 FIG4Q92562 907 aa2.97□□□□□ -1.93
SCN1A-208ENST00000625916 ANKRD9Q96BM1 317 aaPredicted RBP2.97□□□□□ -1.93
SCN1A-208ENST00000625916 C3orf49Q96BT1 292 aa2.97□□□□□ -1.93
SCN1A-208ENST00000625916 C3orf30Q96M34 536 aa2.97□□□□□ -1.93
SCN1A-208ENST00000625916 CSF3RQ99062 836 aa2.97□□□□□ -1.93
SCN1A-208ENST00000625916 PTPRHQ9HD43 1115 aa2.97□□□□□ -1.93
SCN1A-208ENST00000625916 SIX4Q9UIU6 781 aa2.97□□□□□ -1.93
SCN1A-208ENST00000625916 C19orf53Q9UNZ5 99 aaPredicted RBP2.97□□□□□ -1.93
SCN1A-208ENST00000625916 SLC25A17O43808 307 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 ITGA2BP08514 1039 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 LINC00271P0C7V0 271 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 KRT5P13647 590 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 TRIM27P14373 513 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 CHN1P15882 459 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 ABCB4P21439 1286 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 MCM3P25205 808 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 IL15P40933 162 aaPredicted RBP2.96□□□□□ -1.94
SCN1A-208ENST00000625916 FUT6P51993 359 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 DCTN1Q14203 1278 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 SPARCL1Q14515 664 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 STARD3Q14849 445 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 DGAT2L7PQ6IED9 249 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 C11orf96Q7Z7L8 435 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 FMNL3Q8IVF7 1028 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 DENND6AQ8IWF6 608 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 CIARTQ8N365 385 aaPredicted RBP2.96□□□□□ -1.94
SCN1A-208ENST00000625916 PTGR2Q8N8N7 351 aaPredicted RBP2.96□□□□□ -1.94
SCN1A-208ENST00000625916 MCPH1Q8NEM0 835 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 DMBX1Q8NFW5 382 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 PJA1Q8NG27 643 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 FAM71BQ8TC56 605 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 OTUD7AQ8TE49 926 aaPredicted RBP2.96□□□□□ -1.94
SCN1A-208ENST00000625916 TANKQ92844 425 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 RNF183Q96D59 192 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 RBM4Q9BWF3 364 aaKnown RBP2.96□□□□□ -1.94
SCN1A-208ENST00000625916 MOV10L1Q9BXT6 1211 aaKnown RBP2.96□□□□□ -1.94
SCN1A-208ENST00000625916 BARHL1Q9BZE3 327 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 FBRSL1Q9HCM7 1045 aaKnown RBP2.96□□□□□ -1.94
SCN1A-208ENST00000625916 THAP1Q9NVV9 213 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 NDUFAF4Q9P032 175 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 NLKQ9UBE8 527 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 SLCO3A1Q9UIG8 710 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 ZNF711Q9Y462 761 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 SMAD5-AS1Q9Y6J3 95 aa2.96□□□□□ -1.94
SCN1A-208ENST00000625916 C17orf100A8MU93 164 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms